Project name: query_structure

Status: done

Started: 2026-03-16 23:44:13
Settings
Chain sequence(s) A: GTCNTPGCTCSAPVCTRNGLPVCGETCVG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:12)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:13)
Show buried residues

Minimal score value
-1.386
Maximal score value
1.5216
Average score
-0.078
Total score value
-2.262

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.0303
2 T A 0.0536
3 C A -0.4222
4 N A -1.1328
5 T A -1.0293
6 P A -0.8881
7 G A -1.1077
8 C A -0.7065
9 T A -0.6045
10 C A -0.0325
11 S A -0.1436
12 A A 0.1672
13 P A 0.1501
14 V A 0.6014
15 C A 0.0000
16 T A 0.0000
17 R A -0.9066
18 N A -1.3860
19 G A -0.4624
20 L A 1.0490
21 P A 0.7793
22 V A 1.5216
23 C A 0.3933
24 G A 0.0459
25 E A -0.1541
26 T A 0.0633
27 C A 0.4540
28 V A 1.2060
29 G A 0.2599
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Laboratory of Theory of Biopolymers 2018