| Chain sequence(s) |
H: QVQLVESGGGLVQAGGSLKLSCVASGNIFRSLHMGWYRQAPGKQRELVAIITDTSSTGYTDSVKGRFTISRDNTKNTMYLQMNNLKPEDTAVYYCNARLANIYWGRGTQVTVSS
input PDB |
| Selected Chain(s) | H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with H chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:15)
[INFO] Main: Simulation completed successfully. (00:01:16)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.6223 | |
| 2 | V | H | -1.0416 | |
| 3 | Q | H | -0.8756 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.7535 | |
| 6 | E | H | -0.0064 | |
| 7 | S | H | -0.5521 | |
| 8 | G | H | -1.1322 | |
| 9 | G | H | -0.6399 | |
| 11 | G | H | 0.3100 | |
| 12 | L | H | 1.1728 | |
| 13 | V | H | 0.1114 | |
| 14 | Q | H | -1.3303 | |
| 15 | A | H | -1.7863 | |
| 16 | G | H | -1.7845 | |
| 17 | G | H | -1.1857 | |
| 18 | S | H | -1.4243 | |
| 19 | L | H | -0.9574 | |
| 20 | K | H | -1.9039 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.1481 | |
| 23 | C | H | 0.0000 | |
| 24 | V | H | 0.6363 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.9131 | |
| 27 | G | H | -1.5168 | |
| 28 | N | H | -1.7985 | |
| 29 | I | H | -1.4391 | |
| 30 | F | H | 0.0000 | |
| 35 | R | H | -2.3862 | |
| 36 | S | H | -0.9448 | |
| 37 | L | H | -0.4540 | |
| 38 | H | H | -0.6366 | |
| 39 | M | H | 0.0000 | |
| 40 | G | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | Y | H | 0.2551 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -1.2078 | |
| 45 | A | H | -1.2801 | |
| 46 | P | H | -1.0371 | |
| 47 | G | H | -1.4336 | |
| 48 | K | H | -2.1438 | |
| 49 | Q | H | -2.2250 | |
| 50 | R | H | -1.5486 | |
| 51 | E | H | -0.8035 | |
| 52 | L | H | 0.3912 | |
| 53 | V | H | 0.0000 | |
| 54 | A | H | 0.0000 | |
| 55 | I | H | 0.5956 | |
| 56 | I | H | 0.0000 | |
| 57 | T | H | -0.7666 | |
| 58 | D | H | -1.5198 | |
| 59 | T | H | -0.7274 | |
| 63 | S | H | -0.7524 | |
| 64 | S | H | -0.4229 | |
| 65 | T | H | -0.1067 | |
| 66 | G | H | -0.2587 | |
| 67 | Y | H | -0.6072 | |
| 68 | T | H | -1.1310 | |
| 69 | D | H | -2.5346 | |
| 70 | S | H | -1.7639 | |
| 71 | V | H | 0.0000 | |
| 72 | K | H | -2.6580 | |
| 74 | G | H | -1.8972 | |
| 75 | R | H | -1.8570 | |
| 76 | F | H | 0.0000 | |
| 77 | T | H | -0.7515 | |
| 78 | I | H | 0.0000 | |
| 79 | S | H | -0.2411 | |
| 80 | R | H | -1.1796 | |
| 81 | D | H | -1.7353 | |
| 82 | N | H | -2.5559 | |
| 83 | T | H | -1.6787 | |
| 84 | K | H | -2.2383 | |
| 85 | N | H | -1.9045 | |
| 86 | T | H | 0.0000 | |
| 87 | M | H | 0.0000 | |
| 88 | Y | H | -0.2116 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -1.1269 | |
| 91 | M | H | 0.0000 | |
| 92 | N | H | -1.8920 | |
| 93 | N | H | -2.2981 | |
| 94 | L | H | 0.0000 | |
| 95 | K | H | -2.4040 | |
| 96 | P | H | -1.7838 | |
| 97 | E | H | -2.2556 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.7491 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | -0.2918 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | -0.1282 | |
| 104 | C | H | 0.0000 | |
| 105 | N | H | 0.0000 | |
| 106 | A | H | 0.0000 | |
| 107 | R | H | -0.7459 | |
| 108 | L | H | -0.2990 | |
| 114 | A | H | -0.2594 | |
| 115 | N | H | -0.6439 | |
| 116 | I | H | 0.8520 | |
| 117 | Y | H | 0.6075 | |
| 118 | W | H | 0.5215 | |
| 119 | G | H | -0.2901 | |
| 120 | R | H | -1.5716 | |
| 121 | G | H | -0.7946 | |
| 122 | T | H | -0.7164 | |
| 123 | Q | H | -0.5289 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | -0.1164 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.7738 | |
| 128 | S | H | -0.8288 |