Project name: ATPase4

Status: done

Started: 2026-02-11 17:23:51
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Chain sequence(s) A: MEFTRLSKNLWRASEETLVLYSVGKTLKKVGVRAVLTPEQLAKAEALLREERKRLAERFRALGVRALVEVVVKHSYMPEEEAKRLIELRERLTREAAPDIVVRTVVVDETTPEEEVRARAAAAGEAALAEAAARRAAA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:05)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:05)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:05)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:05)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:05)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:46)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:48)
Show buried residues

Minimal score value
-4.7488
Maximal score value
1.1234
Average score
-1.3421
Total score value
-185.2103

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A -0.1430
2 E A -1.5617
3 F A -1.0102
4 T A -1.0811
5 R A -2.1211
6 L A -0.6940
7 S A -1.2692
8 K A -2.0847
9 N A -0.9955
10 L A 0.0000
11 W A -0.9660
12 R A -1.1947
13 A A -1.3156
14 S A -1.4876
15 E A -2.2077
16 E A -1.7151
17 T A 0.0000
18 L A 0.0000
19 V A 0.0000
20 L A 0.1596
21 Y A 0.5373
22 S A 0.7206
23 V A 1.1234
24 G A -0.4424
25 K A -2.0473
26 T A 0.0000
27 L A 0.0000
28 K A -2.6893
29 K A -2.7380
30 V A 0.0000
31 G A -1.2470
32 V A -0.4162
33 R A -0.5432
34 A A 0.4401
35 V A 0.8829
36 L A 0.0000
37 T A -0.7572
38 P A -1.1518
39 E A -2.2715
40 Q A -1.6487
41 L A -0.9239
42 A A -1.4336
43 K A -2.1083
44 A A 0.0000
45 E A -1.8793
46 A A -1.8333
47 L A -1.9383
48 L A 0.0000
49 R A -4.3077
50 E A -4.3017
51 E A -3.9212
52 R A 0.0000
53 K A -4.7488
54 R A -4.5932
55 L A 0.0000
56 A A 0.0000
57 E A -4.0698
58 R A -3.5808
59 F A 0.0000
60 R A -3.1409
61 A A -1.7230
62 L A -1.3215
63 G A -1.4890
64 V A 0.0000
65 R A -1.3295
66 A A 0.0000
67 L A 0.0000
68 V A 0.0000
69 E A 0.0000
70 V A 0.0000
71 V A 0.0000
72 V A -0.6273
73 K A -2.2037
74 H A -1.3042
75 S A -0.7493
76 Y A 0.5359
77 M A 0.0000
78 P A -1.5889
79 E A -3.4348
80 E A -3.3755
81 E A 0.0000
82 A A -2.2753
83 K A -3.4073
84 R A -2.9560
85 L A -1.7079
86 I A -1.6097
87 E A -2.2369
88 L A -1.9460
89 R A -1.8606
90 E A -2.0759
91 R A -3.1379
92 L A -3.1934
93 T A 0.0000
94 R A -2.7331
95 E A -3.4185
96 A A -3.3882
97 A A 0.0000
98 P A -2.1197
99 D A -2.8781
100 I A 0.0000
101 V A 0.0000
102 V A 0.0000
103 R A -0.4950
104 T A -0.3877
105 V A 0.0000
106 V A -0.1855
107 V A 0.0000
108 D A -2.3651
109 E A -2.8694
110 T A -1.5506
111 T A -1.9752
112 P A -2.6572
113 E A -3.8304
114 E A -3.8491
115 E A -3.6091
116 V A 0.0000
117 R A -3.0476
118 A A -2.1667
119 R A -2.2836
120 A A 0.0000
121 A A -1.2468
122 A A -1.0863
123 A A -1.0480
124 G A 0.0000
125 E A -1.8017
126 A A -0.9390
127 A A 0.0000
128 L A -0.7914
129 A A -0.7199
130 E A -1.2982
131 A A 0.0000
132 A A -1.1189
133 A A -1.2974
134 R A -2.5248
135 R A -2.6920
136 A A -1.2631
137 A A -0.9318
138 A A -0.9068
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Laboratory of Theory of Biopolymers 2018