| Chain sequence(s) |
H: QVQLVQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSS
L: EIVLTQSPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASSYTFGQGTK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:37)
[INFO] Main: Simulation completed successfully. (00:01:38)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.4481 | |
| 2 | V | H | -1.0585 | |
| 3 | Q | H | -1.1388 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.3406 | |
| 6 | Q | H | -0.3092 | |
| 7 | S | H | -0.6576 | |
| 8 | G | H | -0.4801 | |
| 9 | A | H | 0.0955 | |
| 11 | E | H | 0.2366 | |
| 12 | V | H | 1.2403 | |
| 13 | K | H | -0.7051 | |
| 14 | K | H | -2.0642 | |
| 15 | P | H | -2.0560 | |
| 16 | G | H | -1.6844 | |
| 17 | A | H | -1.1698 | |
| 18 | S | H | -1.4631 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.8883 | |
| 21 | V | H | 0.0000 | |
| 22 | S | H | -0.4531 | |
| 23 | C | H | 0.0000 | |
| 24 | Q | H | -0.8692 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -1.1252 | |
| 27 | G | H | -1.3382 | |
| 28 | Y | H | -1.4428 | |
| 29 | R | H | -2.2676 | |
| 30 | F | H | 0.0000 | |
| 35 | S | H | -1.0660 | |
| 36 | N | H | -1.4251 | |
| 37 | F | H | -0.3312 | |
| 38 | V | H | 0.0000 | |
| 39 | I | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.8067 | |
| 45 | A | H | -0.7509 | |
| 46 | P | H | -0.9490 | |
| 47 | G | H | -1.4370 | |
| 48 | Q | H | -2.0961 | |
| 49 | R | H | -1.8437 | |
| 50 | F | H | 0.0000 | |
| 51 | E | H | -0.9413 | |
| 52 | W | H | 0.0000 | |
| 53 | M | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | W | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | N | H | -1.0675 | |
| 58 | P | H | 0.0000 | |
| 59 | Y | H | -0.0109 | |
| 62 | N | H | -1.4625 | |
| 63 | G | H | -1.4473 | |
| 64 | N | H | -2.0858 | |
| 65 | K | H | -1.5173 | |
| 66 | E | H | -0.6246 | |
| 67 | F | H | -0.1866 | |
| 68 | S | H | -0.7641 | |
| 69 | A | H | -1.2758 | |
| 70 | K | H | -2.2366 | |
| 71 | F | H | 0.0000 | |
| 72 | Q | H | -2.2788 | |
| 74 | D | H | -2.7519 | |
| 75 | R | H | -1.9389 | |
| 76 | V | H | 0.0000 | |
| 77 | T | H | -0.8169 | |
| 78 | F | H | 0.0000 | |
| 79 | T | H | -0.3879 | |
| 80 | A | H | -0.5130 | |
| 81 | D | H | -0.8160 | |
| 82 | T | H | -0.6556 | |
| 83 | S | H | -0.6244 | |
| 84 | A | H | -0.7553 | |
| 85 | N | H | -1.3833 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.3353 | |
| 89 | M | H | 0.0000 | |
| 90 | E | H | -1.1227 | |
| 91 | L | H | 0.0000 | |
| 92 | R | H | -1.6580 | |
| 93 | S | H | -1.5223 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -2.4624 | |
| 96 | S | H | -1.4150 | |
| 97 | A | H | -0.6629 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | 0.0039 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.1565 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | V | H | 0.0000 | |
| 108 | G | H | 0.0000 | |
| 109 | P | H | 0.2338 | |
| 110 | Y | H | 0.7323 | |
| 111 | S | H | 0.1523 | |
| 111A | W | H | 0.3495 | |
| 111B | D | H | -1.3880 | |
| 111C | D | H | -1.0156 | |
| 112D | S | H | -0.8157 | |
| 112C | P | H | -0.5754 | |
| 112B | Q | H | -0.4396 | |
| 112A | D | H | -1.0308 | |
| 112 | N | H | 0.0000 | |
| 113 | Y | H | 0.0120 | |
| 114 | Y | H | 0.0000 | |
| 115 | M | H | 0.0000 | |
| 116 | D | H | -0.2801 | |
| 117 | V | H | -0.2548 | |
| 118 | W | H | 0.0000 | |
| 119 | G | H | 0.0000 | |
| 120 | K | H | -1.8643 | |
| 121 | G | H | -0.8944 | |
| 122 | T | H | 0.0000 | |
| 123 | T | H | 0.1678 | |
| 124 | V | H | 0.0000 | |
| 125 | I | H | 0.6354 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.7848 | |
| 128 | S | H | -1.0267 | |
| 1 | E | L | -1.5182 | |
| 2 | I | L | -0.5026 | |
| 3 | V | L | 0.4171 | |
| 4 | L | L | 0.0000 | |
| 5 | T | L | -0.7150 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.9454 | |
| 8 | P | L | -0.6927 | |
| 9 | G | L | -1.0664 | |
| 10 | T | L | -0.8897 | |
| 11 | L | L | -0.1854 | |
| 12 | S | L | -0.2362 | |
| 13 | L | L | -0.2854 | |
| 14 | S | L | -0.8644 | |
| 15 | P | L | -1.4332 | |
| 16 | G | L | -1.9827 | |
| 17 | E | L | -2.7269 | |
| 18 | R | L | -3.0516 | |
| 19 | A | L | 0.0000 | |
| 20 | T | L | -0.6192 | |
| 21 | F | L | 0.0000 | |
| 22 | S | L | -0.8390 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.2371 | |
| 25 | S | L | 0.0000 | |
| 26 | S | L | -0.9094 | |
| 27 | H | L | -1.5115 | |
| 28 | S | L | -1.7556 | |
| 29 | I | L | 0.0000 | |
| 30 | R | L | -2.6938 | |
| 36 | S | L | -1.9975 | |
| 37 | R | L | -2.5967 | |
| 38 | R | L | -1.5439 | |
| 39 | V | L | 0.0000 | |
| 40 | A | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | H | L | -0.7497 | |
| 45 | K | L | -0.9536 | |
| 46 | P | L | -1.0806 | |
| 47 | G | L | -1.4158 | |
| 48 | Q | L | -1.8532 | |
| 49 | A | L | -1.5277 | |
| 50 | P | L | 0.0000 | |
| 51 | R | L | -1.0584 | |
| 52 | L | L | 0.0000 | |
| 53 | V | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | H | L | -1.2009 | |
| 56 | G | L | -1.3637 | |
| 57 | V | L | 0.0000 | |
| 65 | S | L | -1.3212 | |
| 66 | N | L | -1.7356 | |
| 67 | R | L | -2.3514 | |
| 68 | A | L | -1.2853 | |
| 69 | S | L | -0.8990 | |
| 70 | G | L | -1.0980 | |
| 71 | I | L | 0.0000 | |
| 72 | S | L | -1.4277 | |
| 74 | D | L | -2.2753 | |
| 75 | R | L | -1.8018 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -1.1337 | |
| 78 | G | L | -0.7583 | |
| 79 | S | L | -0.6795 | |
| 80 | G | L | -1.1583 | |
| 83 | S | L | -1.5965 | |
| 84 | G | L | -1.8015 | |
| 85 | T | L | -1.7565 | |
| 86 | D | L | -1.9222 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.7127 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.7723 | |
| 91 | I | L | 0.0000 | |
| 92 | T | L | -2.1227 | |
| 93 | R | L | -2.8919 | |
| 94 | V | L | 0.0000 | |
| 95 | E | L | -1.6244 | |
| 96 | P | L | -1.1725 | |
| 97 | E | L | -1.7116 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | 0.3022 | |
| 100 | A | L | -0.2678 | |
| 101 | L | L | -0.4556 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | V | L | 0.0000 | |
| 107 | Y | L | 0.0000 | |
| 108 | G | L | -0.5816 | |
| 109 | A | L | -0.3086 | |
| 114 | S | L | -0.1525 | |
| 115 | S | L | -0.4445 | |
| 116 | Y | L | 0.0000 | |
| 117 | T | L | -0.2095 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | Q | L | -1.2884 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.5825 |