Project name: CUR-TS-PCa001_VH_B7H3_IgC_novel

Status: done

Started: 2026-04-07 22:14:30
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Chain sequence(s) A: EVQLVESGGGLVQPGGSLRLSCAASGSSFSNYAWVRQAPGKGLEWVSISYDGSRTRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARARGGYYDYGSGFDYWGQGTLVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:32)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:33)
Show buried residues

Minimal score value
-2.6916
Maximal score value
1.5548
Average score
-0.6299
Total score value
-70.5511

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E A -2.2785
2 V A 0.0000
3 Q A -1.4351
4 L A 0.0000
5 V A 1.2122
6 E A 0.0000
7 S A -0.1599
8 G A -0.6534
9 G A 0.1032
10 G A 0.6557
11 L A 1.3291
12 V A 0.0000
13 Q A -1.3806
14 P A -1.6346
15 G A -1.3903
16 G A -0.9536
17 S A -1.2706
18 L A -1.0679
19 R A -2.1209
20 L A 0.0000
21 S A -0.4294
22 C A 0.0000
23 A A -0.0774
24 A A 0.0000
25 S A -1.2156
26 G A -1.5388
27 S A -1.0265
28 S A -0.6530
29 F A 0.0000
30 S A -0.4178
31 N A -0.3626
32 Y A 0.0000
33 A A 0.0000
34 W A 0.0000
35 V A 0.0000
36 R A -0.1923
37 Q A -0.6832
38 A A -1.1899
39 P A -1.2381
40 G A -1.4630
41 K A -2.2356
42 G A -1.1090
43 L A 0.1486
44 E A -0.5455
45 W A 0.4038
46 V A 0.0000
47 S A -0.2906
48 I A 0.0000
49 S A 0.0000
50 Y A 0.1978
51 D A -1.6539
52 G A -1.0763
53 S A -1.4373
54 R A -1.9445
55 T A -1.1209
56 R A -1.2176
57 F A 0.0000
58 T A -1.2657
59 I A 0.0000
60 S A -1.2959
61 R A -2.1993
62 D A -2.3345
63 N A -2.6442
64 S A -2.0675
65 K A -2.6916
66 N A -2.1821
67 T A 0.0000
68 L A 0.0000
69 Y A -0.8653
70 L A 0.0000
71 Q A -1.2629
72 M A 0.0000
73 N A -1.3532
74 S A -1.1831
75 L A 0.0000
76 R A -2.3505
77 A A -1.7962
78 E A -2.2813
79 D A 0.0000
80 T A -0.4883
81 A A 0.0000
82 V A 0.7501
83 Y A 0.0000
84 Y A 0.5335
85 C A 0.0000
86 A A 0.0000
87 R A -0.7171
88 A A 0.0000
89 R A -2.4419
90 G A -1.5900
91 G A -0.5049
92 Y A 1.0218
93 Y A 0.8617
94 D A -1.4759
95 Y A -0.7638
96 G A -1.1483
97 S A -1.4271
98 G A -1.1519
99 F A -0.5382
100 D A -0.7550
101 Y A -0.3412
102 W A 0.3342
103 G A -0.0145
104 Q A -0.6180
105 G A 0.0000
106 T A 0.6335
107 L A 1.5548
108 V A 0.0000
109 T A 0.3169
110 V A 0.0000
111 S A -0.5009
112 S A -0.8935
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Laboratory of Theory of Biopolymers 2018