Project name: 1REX [mutate: YN54A] [mutate: FI57A]

Status: done

Started: 2024-11-21 07:02:35
Settings
Chain sequence(s) A: KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDNGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues FI57A
Energy difference between WT (input) and mutated protein (by FoldX) 3.94214 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:25)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:27)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:52)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:52)
Show buried residues

Minimal score value
-4.2917
Maximal score value
1.52
Average score
-1.0679
Total score value
-138.8276

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -2.5139
2 V A -0.3208
3 F A 0.0000
4 E A -2.1414
5 R A -1.8512
6 C A -1.5046
7 E A -1.8609
8 L A 0.0000
9 A A 0.0000
10 R A -2.2155
11 T A -1.6864
12 L A 0.0000
13 K A -2.3819
14 R A -2.5646
15 L A -1.2815
16 G A -1.4515
17 M A 0.0000
18 D A -2.1982
19 G A -1.7726
20 Y A -1.7467
21 R A -2.6583
22 G A -1.6576
23 I A 0.0000
24 S A -1.2937
25 L A 0.0000
26 A A -1.2076
27 N A -1.1579
28 W A 0.0000
29 M A 0.0000
30 C A 0.0000
31 L A 0.0000
32 A A 0.0000
33 K A -1.0259
34 W A -0.5177
35 E A -0.2313
36 S A -0.7205
37 G A -0.5961
38 Y A 0.0000
39 N A -1.3409
40 T A 0.0000
41 R A -2.5352
42 A A -1.3758
43 T A -1.0152
44 N A -0.8759
45 Y A -0.2546
46 N A -1.3124
47 A A -1.2585
48 G A -1.6767
49 D A -2.6782
50 R A -2.9030
51 S A 0.0000
52 T A 0.0000
53 D A -0.6744
54 N A 0.0000
55 G A 0.0000
56 I A 0.0000
57 I A 0.0000 mutated: FI57A
58 Q A 0.0000
59 I A 0.0000
60 N A -0.4797
61 S A 0.0000
62 R A -0.6736
63 Y A 1.1105
64 W A 0.2165
65 C A 0.0000
66 N A -1.1854
67 D A -1.6391
68 G A -1.7299
69 K A -2.3755
70 T A 0.0000
71 P A -1.3547
72 G A -0.2819
73 A A 0.0690
74 V A 1.5200
75 N A 0.1455
76 A A 0.1830
77 C A -0.4476
78 H A -0.8060
79 L A -0.7487
80 S A -0.8537
81 C A 0.0000
82 S A -0.7414
83 A A -1.0194
84 L A 0.0000
85 L A -2.0087
86 Q A -3.1305
87 D A -3.5506
88 N A -2.8985
89 I A 0.0000
90 A A -1.0978
91 D A -1.3457
92 A A 0.0000
93 V A 0.0000
94 A A -0.5774
95 C A 0.0000
96 A A 0.0000
97 K A -1.6479
98 R A -1.7755
99 V A 0.0000
100 V A 0.0000
101 R A -3.0435
102 D A -2.1849
103 P A -1.4663
104 Q A -1.6724
105 G A -2.1076
106 I A 0.0000
107 R A -1.9483
108 A A -0.7502
109 W A 0.0000
110 V A 0.3397
111 A A -0.7089
112 W A -1.5939
113 R A -2.8386
114 N A -2.8052
115 R A -3.1064
116 C A 0.0000
117 Q A -3.2108
118 N A -3.3671
119 R A -4.2917
120 D A -3.8972
121 V A -3.0655
122 R A -3.3793
123 Q A -2.7815
124 Y A 0.0000
125 V A -1.4445
126 Q A -2.1298
127 G A -1.1570
128 C A 0.0000
129 G A -0.4697
130 V A -0.1632
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Laboratory of Theory of Biopolymers 2018