| Chain sequence(s) |
A: EASLTGAGATFPAPVYAKWADTYQKETGNKVNYQGIGSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLFQFPTVIGGVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKWDDEAIAKLNPGLKLPSQNIAVVRRADGSGTSFVFTSYLAKVNEEWKNNVGTGSTVKWPIGLGGKGNDGIAAFVQRLPGAIGYVEYWYAKQNNLAYTKLISADGKPVSPTEENFANAAKGADWSKTFAQDLTNQKGEDAWPITSTTFILIHKDQKKPEQGTEVLKFFDWAYKTGAKQANDLDYASLPDSVVEQVRAAWKTNIKDSSGKPLY
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:01)
[INFO] Main: Simulation completed successfully. (00:00:02)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | A | -2.3334 | |
| 2 | A | A | -1.8072 | |
| 3 | S | A | -1.3650 | |
| 4 | L | A | 0.0000 | |
| 5 | T | A | -0.8241 | |
| 6 | G | A | 0.0000 | |
| 7 | A | A | 0.0000 | |
| 8 | G | A | 0.0000 | |
| 9 | A | A | 0.0000 | |
| 10 | T | A | 0.0000 | |
| 11 | F | A | 0.0000 | |
| 12 | P | A | 0.0000 | |
| 13 | A | A | -0.1241 | |
| 14 | P | A | -0.0825 | |
| 15 | V | A | 0.0000 | |
| 16 | Y | A | 0.0000 | |
| 17 | A | A | -0.8942 | |
| 18 | K | A | -0.9786 | |
| 19 | W | A | 0.0000 | |
| 20 | A | A | 0.0000 | |
| 21 | D | A | -3.0790 | |
| 22 | T | A | -2.3968 | |
| 23 | Y | A | 0.0000 | |
| 24 | Q | A | -3.3933 | |
| 25 | K | A | -3.5908 | |
| 26 | E | A | -3.2010 | |
| 27 | T | A | -2.2983 | |
| 28 | G | A | -2.6009 | |
| 29 | N | A | -2.7039 | |
| 30 | K | A | -2.6195 | |
| 31 | V | A | -1.5850 | |
| 32 | N | A | -1.8207 | |
| 33 | Y | A | -0.8313 | |
| 34 | Q | A | -0.7897 | |
| 35 | G | A | -0.6070 | |
| 36 | I | A | 0.1217 | |
| 37 | G | A | 0.0000 | |
| 38 | S | A | 0.0000 | |
| 39 | S | A | -0.4954 | |
| 40 | G | A | -0.5912 | |
| 41 | G | A | 0.0000 | |
| 42 | V | A | -0.4771 | |
| 43 | K | A | -1.6621 | |
| 44 | Q | A | -1.0396 | |
| 45 | I | A | 0.0000 | |
| 46 | I | A | -0.3714 | |
| 47 | A | A | -0.6898 | |
| 48 | N | A | -1.5847 | |
| 49 | T | A | -0.8964 | |
| 50 | V | A | 0.0000 | |
| 51 | D | A | -0.9190 | |
| 52 | F | A | 0.0000 | |
| 53 | G | A | 0.0000 | |
| 54 | A | A | 0.0000 | |
| 55 | S | A | 0.0000 | |
| 56 | D | A | 0.0000 | |
| 57 | A | A | -0.0757 | |
| 58 | P | A | -0.4210 | |
| 59 | L | A | -0.8433 | |
| 60 | S | A | -1.9191 | |
| 61 | D | A | -3.0391 | |
| 62 | E | A | -3.3836 | |
| 63 | K | A | -2.5838 | |
| 64 | L | A | -2.0170 | |
| 65 | A | A | -2.0848 | |
| 66 | Q | A | -2.4247 | |
| 67 | E | A | -1.4654 | |
| 68 | G | A | -1.4876 | |
| 69 | L | A | 0.0000 | |
| 70 | F | A | 0.0000 | |
| 71 | Q | A | 0.0000 | |
| 72 | F | A | 0.0000 | |
| 73 | P | A | 0.0000 | |
| 74 | T | A | 0.0000 | |
| 75 | V | A | 0.0000 | |
| 76 | I | A | 0.0000 | |
| 77 | G | A | 0.0000 | |
| 78 | G | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | V | A | 0.0000 | |
| 81 | L | A | 0.0000 | |
| 82 | A | A | 0.0000 | |
| 83 | V | A | 0.0000 | |
| 84 | N | A | -1.0485 | |
| 85 | I | A | 0.0000 | |
| 86 | P | A | -0.9038 | |
| 87 | G | A | -1.1463 | |
| 88 | L | A | -1.4290 | |
| 89 | K | A | -2.1410 | |
| 90 | S | A | -1.6824 | |
| 91 | G | A | -1.0892 | |
| 92 | E | A | -1.4440 | |
| 93 | L | A | 0.0000 | |
| 94 | V | A | -0.3205 | |
| 95 | L | A | 0.0000 | |
| 96 | D | A | -0.8613 | |
| 97 | G | A | 0.0000 | |
| 98 | K | A | -2.1923 | |
| 99 | T | A | 0.0000 | |
| 100 | L | A | 0.0000 | |
| 101 | G | A | 0.0000 | |
| 102 | D | A | 0.0000 | |
| 103 | I | A | 0.0000 | |
| 104 | Y | A | 0.0000 | |
| 105 | L | A | -0.6809 | |
| 106 | G | A | -0.9798 | |
| 107 | K | A | -2.0415 | |
| 108 | I | A | 0.0000 | |
| 109 | K | A | -3.0063 | |
| 110 | K | A | -2.9332 | |
| 111 | W | A | 0.0000 | |
| 112 | D | A | -2.3638 | |
| 113 | D | A | 0.0000 | |
| 114 | E | A | -2.5061 | |
| 115 | A | A | -1.6567 | |
| 116 | I | A | 0.0000 | |
| 117 | A | A | -1.8410 | |
| 118 | K | A | -2.1651 | |
| 119 | L | A | -0.7866 | |
| 120 | N | A | 0.0000 | |
| 121 | P | A | -1.0334 | |
| 122 | G | A | -1.0496 | |
| 123 | L | A | -1.1643 | |
| 124 | K | A | -1.8515 | |
| 125 | L | A | -1.2184 | |
| 126 | P | A | -1.1591 | |
| 127 | S | A | -1.5018 | |
| 128 | Q | A | -1.7321 | |
| 129 | N | A | -2.3652 | |
| 130 | I | A | -1.4840 | |
| 131 | A | A | -0.3743 | |
| 132 | V | A | 0.0000 | |
| 133 | V | A | 0.0000 | |
| 134 | R | A | -0.2313 | |
| 135 | R | A | 0.0000 | |
| 136 | A | A | -0.6630 | |
| 137 | D | A | -0.8591 | |
| 138 | G | A | -0.3355 | |
| 139 | S | A | 0.0000 | |
| 140 | G | A | 0.0000 | |
| 141 | T | A | 0.0000 | |
| 142 | S | A | 0.0000 | |
| 143 | F | A | 0.5102 | |
| 144 | V | A | 0.0000 | |
| 145 | F | A | 0.0000 | |
| 146 | T | A | 0.0000 | |
| 147 | S | A | -0.6416 | |
| 148 | Y | A | 0.0000 | |
| 149 | L | A | 0.0000 | |
| 150 | A | A | -2.4263 | |
| 151 | K | A | -1.9755 | |
| 152 | V | A | -1.6854 | |
| 153 | N | A | 0.0000 | |
| 154 | E | A | -3.8802 | |
| 155 | E | A | -3.3453 | |
| 156 | W | A | 0.0000 | |
| 157 | K | A | -3.8559 | |
| 158 | N | A | -3.5506 | |
| 159 | N | A | -3.0654 | |
| 160 | V | A | -2.0095 | |
| 161 | G | A | -2.0283 | |
| 162 | T | A | -0.8146 | |
| 163 | G | A | -0.0399 | |
| 164 | S | A | 0.0656 | |
| 165 | T | A | -0.3547 | |
| 166 | V | A | -0.5504 | |
| 167 | K | A | -1.6129 | |
| 168 | W | A | -0.5191 | |
| 169 | P | A | -0.4126 | |
| 170 | I | A | 0.3775 | |
| 171 | G | A | 0.6412 | |
| 172 | L | A | 1.0592 | |
| 173 | G | A | -0.0805 | |
| 174 | G | A | 0.0000 | |
| 175 | K | A | -2.0999 | |
| 176 | G | A | 0.0000 | |
| 177 | N | A | 0.0000 | |
| 178 | D | A | -2.1535 | |
| 179 | G | A | -1.6536 | |
| 180 | I | A | 0.0000 | |
| 181 | A | A | 0.0000 | |
| 182 | A | A | -1.1982 | |
| 183 | F | A | -0.7008 | |
| 184 | V | A | 0.0000 | |
| 185 | Q | A | -1.8709 | |
| 186 | R | A | -2.0681 | |
| 187 | L | A | -0.9090 | |
| 188 | P | A | -1.0128 | |
| 189 | G | A | 0.0000 | |
| 190 | A | A | 0.0000 | |
| 191 | I | A | 0.0000 | |
| 192 | G | A | 0.0000 | |
| 193 | Y | A | 0.0000 | |
| 194 | V | A | 0.0000 | |
| 195 | E | A | 0.0000 | |
| 196 | Y | A | 0.0000 | |
| 197 | W | A | -1.0491 | |
| 198 | Y | A | 0.0000 | |
| 199 | A | A | 0.0000 | |
| 200 | K | A | -2.1314 | |
| 201 | Q | A | -1.8713 | |
| 202 | N | A | -2.0680 | |
| 203 | N | A | -2.2235 | |
| 204 | L | A | 0.0000 | |
| 205 | A | A | -1.2868 | |
| 206 | Y | A | -0.7932 | |
| 207 | T | A | 0.0000 | |
| 208 | K | A | -0.7691 | |
| 209 | L | A | 0.0000 | |
| 210 | I | A | -0.8660 | |
| 211 | S | A | 0.0000 | |
| 212 | A | A | -2.3462 | |
| 213 | D | A | -3.3733 | |
| 214 | G | A | -2.2691 | |
| 215 | K | A | -2.3323 | |
| 216 | P | A | -1.0763 | |
| 217 | V | A | 0.0000 | |
| 218 | S | A | -0.6936 | |
| 219 | P | A | 0.0000 | |
| 220 | T | A | -1.0129 | |
| 221 | E | A | -1.7332 | |
| 222 | E | A | -2.3366 | |
| 223 | N | A | -1.8901 | |
| 224 | F | A | 0.0000 | |
| 225 | A | A | -1.4562 | |
| 226 | N | A | -2.2928 | |
| 227 | A | A | 0.0000 | |
| 228 | A | A | 0.0000 | |
| 229 | K | A | -2.5024 | |
| 230 | G | A | -2.0524 | |
| 231 | A | A | -2.0255 | |
| 232 | D | A | -2.2313 | |
| 233 | W | A | 0.0000 | |
| 234 | S | A | -1.5171 | |
| 235 | K | A | -2.1697 | |
| 236 | T | A | -1.3358 | |
| 237 | F | A | -0.6526 | |
| 238 | A | A | -0.9977 | |
| 239 | Q | A | -1.4921 | |
| 240 | D | A | -1.9475 | |
| 241 | L | A | 0.0000 | |
| 242 | T | A | 0.0000 | |
| 243 | N | A | -1.4948 | |
| 244 | Q | A | -2.5243 | |
| 245 | K | A | -3.3973 | |
| 246 | G | A | -3.2165 | |
| 247 | E | A | -3.2759 | |
| 248 | D | A | -2.7336 | |
| 249 | A | A | 0.0000 | |
| 250 | W | A | 0.0000 | |
| 251 | P | A | 0.0000 | |
| 252 | I | A | 0.0000 | |
| 253 | T | A | 0.0000 | |
| 254 | S | A | 0.0000 | |
| 255 | T | A | 0.0000 | |
| 256 | T | A | 0.0000 | |
| 257 | F | A | 0.0000 | |
| 258 | I | A | 0.0000 | |
| 259 | L | A | 0.0000 | |
| 260 | I | A | 0.0000 | |
| 261 | H | A | -1.5810 | |
| 262 | K | A | -2.1116 | |
| 263 | D | A | -3.4642 | |
| 264 | Q | A | 0.0000 | |
| 265 | K | A | -3.7122 | |
| 266 | K | A | -3.5349 | |
| 267 | P | A | -3.0698 | |
| 268 | E | A | -2.7912 | |
| 269 | Q | A | -2.1741 | |
| 270 | G | A | 0.0000 | |
| 271 | T | A | -1.3579 | |
| 272 | E | A | -1.6560 | |
| 273 | V | A | 0.0000 | |
| 274 | L | A | 0.0000 | |
| 275 | K | A | -1.2584 | |
| 276 | F | A | 0.0000 | |
| 277 | F | A | 0.0000 | |
| 278 | D | A | -1.1207 | |
| 279 | W | A | 0.0000 | |
| 280 | A | A | 0.0000 | |
| 281 | Y | A | -1.3390 | |
| 282 | K | A | -1.9055 | |
| 283 | T | A | -1.1420 | |
| 284 | G | A | 0.0000 | |
| 285 | A | A | -1.5392 | |
| 286 | K | A | -2.4301 | |
| 287 | Q | A | 0.0000 | |
| 288 | A | A | 0.0000 | |
| 289 | N | A | -2.4102 | |
| 290 | D | A | -2.5994 | |
| 291 | L | A | -1.6056 | |
| 292 | D | A | -1.7693 | |
| 293 | Y | A | 0.0000 | |
| 294 | A | A | 0.0000 | |
| 295 | S | A | -0.9837 | |
| 296 | L | A | 0.0000 | |
| 297 | P | A | -1.4887 | |
| 298 | D | A | -2.5964 | |
| 299 | S | A | -1.7989 | |
| 300 | V | A | 0.0000 | |
| 301 | V | A | 0.0000 | |
| 302 | E | A | -2.2851 | |
| 303 | Q | A | -1.4402 | |
| 304 | V | A | 0.0000 | |
| 305 | R | A | -1.1722 | |
| 306 | A | A | -0.9799 | |
| 307 | A | A | -0.8224 | |
| 308 | W | A | 0.0000 | |
| 309 | K | A | -1.4416 | |
| 310 | T | A | -1.1853 | |
| 311 | N | A | -1.6002 | |
| 312 | I | A | 0.0000 | |
| 313 | K | A | -2.7149 | |
| 314 | D | A | -3.1111 | |
| 315 | S | A | -2.2776 | |
| 316 | S | A | -1.6563 | |
| 317 | G | A | -2.0829 | |
| 318 | K | A | -2.6436 | |
| 319 | P | A | -1.8917 | |
| 320 | L | A | -1.3811 | |
| 321 | Y | A | -0.3964 |
ALA alanine
ARG arginine
ASN asparagine
ASP aspartic acid
CYS cysteine
GLN glutamine
GLU glutamic acid
GLY glycine
HIS histidine
ILE isoleucine
LEU leucine
LYS lysine
MET methionine
PHE phenylalanine
PRO proline
SER serine
THR threonine
TRP tryptophan
TYR tyrosine
VAL valine