Project name: MLP_ED

Status: done

Started: 2026-07-16 12:18:37
Settings
Chain sequence(s) C: PPKKKKKKKIFWPCGLTIDYPNRLLYFMDSYLDYMDFCDYNGHHRRQVIASDLIIRHPYALTLFSVYWTDRATRRVMRANKWHGGNQSVVMYNIQWPLGIVAVHPSKQPNSVNPCAFSRCSHLCLLSSQGPHFYSCVCPSGWSLSPDLLNCLRDDQPFLITVRQHIIFGISLNPEVNDAMVPIAGIQNGLDVEFDDAEQYIYWVENPGEIHRDRWHQQDSICFYIYGGAFYEPGLRLDFKKPLFYASSLTDSL
input PDB
Selected Chain(s) C
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with C chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:13)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:15)
Show buried residues

Minimal score value
-3.612
Maximal score value
2.486
Average score
-0.2773
Total score value
-70.1635

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
17 P C -0.9860
18 P C -1.6523
19 K C -3.1207
20 K C -3.6120
21 K C -3.2521
22 K C -3.1797
23 K C -3.2048
24 K C -3.0581
25 K C -2.0447
26 I C 0.1466
27 F C 2.1542
28 W C 2.2742
29 P C 1.3470
30 C C 1.2582
31 G C 1.0448
32 L C 1.8130
33 T C 1.4193
34 I C 1.0056
35 D C 0.0000
36 Y C -0.6780
37 P C -1.1290
38 N C -1.9971
39 R C -1.9233
40 L C -0.8950
41 L C 0.3222
42 Y C 0.0000
43 F C 0.0000
44 M C 0.0000
45 D C 0.0000
46 S C 0.0000
47 Y C 1.7490
48 L C 0.8316
49 D C -0.1882
50 Y C 0.0000
51 M C 0.0000
52 D C 0.0000
53 F C 0.0000
54 C C 0.0000
55 D C -1.5455
56 Y C -0.5144
57 N C -2.0961
58 G C -2.0273
59 H C -2.2512
60 H C -2.1963
61 R C -2.3934
62 R C -2.9116
63 Q C -2.1550
64 V C 0.0000
65 I C 0.0000
66 A C -0.5202
67 S C -0.3907
68 D C -0.6580
69 L C 0.5821
70 I C -0.0400
71 I C 0.0000
72 R C -1.7153
73 H C -1.1474
74 P C 0.0000
75 Y C 0.9598
76 A C 1.0859
77 L C 0.0000
78 T C 0.0000
79 L C 0.0000
80 F C 1.9993
81 S C 0.5574
82 V C 0.0000
83 Y C 0.7032
84 W C 0.0000
85 T C 0.0000
86 D C 0.0000
87 R C -0.6372
88 A C -0.9222
89 T C -1.0433
90 R C -1.4027
91 R C -0.4457
92 V C 0.0000
93 M C 0.0000
94 R C -1.0694
95 A C 0.0000
96 N C -1.0511
97 K C -0.1832
98 W C -0.1875
99 H C -1.3092
100 G C 0.0000
101 G C -1.4518
102 N C -2.1376
103 Q C -1.6520
104 S C -0.6519
105 V C 0.7583
106 V C 1.3051
107 M C 1.1685
108 Y C 0.8424
109 N C -0.9556
110 I C -0.4573
111 Q C -0.9161
112 W C 0.1227
113 P C 0.1624
114 L C 0.9221
115 G C 0.7378
116 I C 1.5553
117 V C 2.4860
118 A C 1.8922
119 V C 1.4960
120 H C -0.4125
121 P C -1.0662
122 S C -1.1078
123 K C -0.8390
124 Q C -1.8614
125 P C -1.6442
126 N C -1.6818
127 S C -0.4962
128 V C 0.7642
129 N C 0.0124
130 P C 0.6833
131 C C 0.7681
132 A C 0.6128
133 F C 1.3641
134 S C 0.0914
135 R C -1.1878
136 C C -0.1078
137 S C -0.3055
138 H C -0.3954
139 L C 0.9326
140 C C 1.2593
141 L C 2.3156
142 L C 2.0031
143 S C 0.8518
144 S C -0.2363
145 Q C -1.1017
146 G C -1.0261
147 P C -0.7184
148 H C -0.4625
149 F C 1.0722
150 Y C 1.1603
151 S C 1.2705
152 C C 0.0000
153 V C 1.2300
154 C C 0.4635
155 P C -0.3158
156 S C -0.9793
157 G C -1.5753
158 W C -0.8153
159 S C -0.1852
160 L C 0.5228
161 S C 0.0136
162 P C -0.5907
163 D C -1.1500
164 L C 0.5374
165 L C -0.1437
166 N C -0.3709
167 C C 0.0000
168 L C 0.0462
169 R C -2.1992
170 D C -2.9040
171 D C -3.2305
172 Q C -2.6985
173 P C -0.8564
174 F C 0.4338
175 L C 1.3849
176 I C 1.2466
177 T C 0.4715
178 V C 0.2491
179 R C -1.1425
180 Q C -1.9856
181 H C -1.8714
182 I C -0.5741
183 I C 0.0000
184 F C 0.2081
185 G C 0.0000
186 I C 0.0000
187 S C 0.0778
188 L C 1.0230
189 N C -0.7339
190 P C -0.8694
191 E C -1.3630
192 V C -0.0251
193 N C -0.8684
194 D C -1.4474
195 A C -0.5576
196 M C 0.0000
197 V C -0.7305
198 P C -0.1462
199 I C 0.0855
200 A C -0.3094
201 G C -1.0186
202 I C 0.0000
203 Q C -2.0762
204 N C -1.7855
205 G C -0.9406
206 L C 0.1891
207 D C -0.2291
208 V C 0.3388
209 E C 0.2153
210 F C 0.7290
211 D C 0.0000
212 D C -1.9913
213 A C -1.5112
214 E C -2.7010
215 Q C -2.5146
216 Y C 0.0000
217 I C 0.0000
218 Y C 0.0000
219 W C 0.0000
220 V C 0.0000
221 E C 0.0000
222 N C -1.2931
223 P C -0.5192
224 G C 0.4511
225 E C 0.8167
226 I C 0.0000
227 H C 0.8117
228 R C 0.0446
229 D C 0.0000
230 R C -2.4115
231 W C -1.7697
232 H C -2.2532
233 Q C -2.6637
234 Q C -2.9036
235 D C -2.5262
236 S C -0.8514
237 I C 1.4366
238 C C 1.6115
239 F C 1.7908
240 Y C 2.2561
241 I C 2.3459
242 Y C 2.0684
243 G C 0.6682
244 G C 0.4428
245 A C 1.1110
246 F C 1.7222
247 Y C 1.4915
248 E C 0.0000
249 P C 0.1474
250 G C 0.1099
251 L C -0.0972
252 R C -0.9022
253 L C -0.1107
254 D C -0.4854
255 F C 0.2451
256 K C -1.5828
257 K C -1.7965
258 P C -0.8403
259 L C -0.0646
260 F C 0.7693
261 Y C 0.9468
262 A C 0.5647
263 S C 0.3921
264 S C 0.2823
265 L C 1.0093
266 T C -0.0534
267 D C -1.2232
268 S C -0.0277
269 L C 1.3614
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018