| Chain sequence(s) |
A: GGKGHFF
C: GGKGHFF B: GGKGHFF D: GGKGHFF input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:10)
[INFO] Main: Simulation completed successfully. (00:02:11)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.7884 | |
| 2 | G | A | -2.6021 | |
| 3 | K | A | -3.0257 | |
| 4 | G | A | -0.8340 | |
| 5 | H | A | 0.0000 | |
| 6 | F | A | 2.3031 | |
| 7 | F | A | 3.7958 | |
| 1 | G | B | -1.6028 | |
| 2 | G | B | -1.4580 | |
| 3 | K | B | -2.1497 | |
| 4 | G | B | -0.4504 | |
| 5 | H | B | 0.8639 | |
| 6 | F | B | 1.4745 | |
| 7 | F | B | 2.1451 | |
| 1 | G | C | -1.7463 | |
| 2 | G | C | -1.5200 | |
| 3 | K | C | -1.6063 | |
| 4 | G | C | 0.0000 | |
| 5 | H | C | 1.9492 | |
| 6 | F | C | 3.8133 | |
| 7 | F | C | 3.5182 | |
| 1 | G | D | -1.2469 | |
| 2 | G | D | -1.4748 | |
| 3 | K | D | -1.2554 | |
| 4 | G | D | 0.0000 | |
| 5 | H | D | 2.1079 | |
| 6 | F | D | 2.6071 | |
| 7 | F | D | 2.2609 |