Project name: GGKGHGG12

Status: done

Started: 2026-05-21 08:51:14
Settings
Chain sequence(s) A: GGKGHGG
C: GGKGHGG
B: GGKGHGG
E: GGKGHGG
D: GGKGHGG
G: GGKGHGG
F: GGKGHGG
I: GGKGHGG
H: GGKGHGG
K: GGKGHGG
J: GGKGHGG
L: GGKGHGG
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:06:36)
[INFO]       Main:     Simulation completed successfully.                                          (00:06:38)
Show buried residues

Minimal score value
-3.8799
Maximal score value
0.0
Average score
-1.7109
Total score value
-143.7185

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.8923
2 G A 0.0000
3 K A -3.6835
4 G A 0.0000
5 H A -2.7189
6 G A 0.0000
7 G A -2.0227
1 G B -1.8117
2 G B -2.6388
3 K B -3.6239
4 G B 0.0000
5 H B -3.0156
6 G B -2.3000
7 G B -1.5914
1 G C -1.7708
2 G C -2.8702
3 K C -3.4389
4 G C 0.0000
5 H C -2.9725
6 G C -2.3858
7 G C 0.0000
1 G D -2.9505
2 G D -2.8890
3 K D -3.5085
4 G D -1.9942
5 H D -2.0710
6 G D -1.3488
7 G D -1.3549
1 G E -2.6848
2 G E 0.0000
3 K E 0.0000
4 G E 0.0000
5 H E -2.1152
6 G E -1.5131
7 G E -1.5237
1 G F -2.4715
2 G F -2.0801
3 K F -2.9831
4 G F 0.0000
5 H F -3.3428
6 G F -2.4204
7 G F -2.3315
1 G G 0.0000
2 G G -2.5675
3 K G -3.7747
4 G G 0.0000
5 H G -3.5462
6 G G -2.5720
7 G G -2.0441
1 G H 0.0000
2 G H -3.0073
3 K H -3.8799
4 G H 0.0000
5 H H -2.7225
6 G H -1.7573
7 G H -1.0850
1 G I -2.7389
2 G I 0.0000
3 K I -3.1833
4 G I 0.0000
5 H I -2.2747
6 G I -2.3336
7 G I -1.3822
1 G J -1.2660
2 G J -1.9260
3 K J -2.9977
4 G J 0.0000
5 H J 0.0000
6 G J 0.0000
7 G J 0.0000
1 G K -1.4722
2 G K -1.9504
3 K K -2.6188
4 G K -2.1220
5 H K -2.1671
6 G K 0.0000
7 G K 0.0000
1 G L -1.5309
2 G L -1.9153
3 K L -2.4370
4 G L -1.9890
5 H L -2.1368
6 G L 0.0000
7 G L 0.0000
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Laboratory of Theory of Biopolymers 2018