| Chain sequence(s) |
A: GGKGHGG
C: GGKGHGG B: GGKGHGG E: GGKGHGG D: GGKGHGG G: GGKGHGG F: GGKGHGG I: GGKGHGG H: GGKGHGG K: GGKGHGG J: GGKGHGG L: GGKGHGG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:06:36)
[INFO] Main: Simulation completed successfully. (00:06:38)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.8923 | |
| 2 | G | A | 0.0000 | |
| 3 | K | A | -3.6835 | |
| 4 | G | A | 0.0000 | |
| 5 | H | A | -2.7189 | |
| 6 | G | A | 0.0000 | |
| 7 | G | A | -2.0227 | |
| 1 | G | B | -1.8117 | |
| 2 | G | B | -2.6388 | |
| 3 | K | B | -3.6239 | |
| 4 | G | B | 0.0000 | |
| 5 | H | B | -3.0156 | |
| 6 | G | B | -2.3000 | |
| 7 | G | B | -1.5914 | |
| 1 | G | C | -1.7708 | |
| 2 | G | C | -2.8702 | |
| 3 | K | C | -3.4389 | |
| 4 | G | C | 0.0000 | |
| 5 | H | C | -2.9725 | |
| 6 | G | C | -2.3858 | |
| 7 | G | C | 0.0000 | |
| 1 | G | D | -2.9505 | |
| 2 | G | D | -2.8890 | |
| 3 | K | D | -3.5085 | |
| 4 | G | D | -1.9942 | |
| 5 | H | D | -2.0710 | |
| 6 | G | D | -1.3488 | |
| 7 | G | D | -1.3549 | |
| 1 | G | E | -2.6848 | |
| 2 | G | E | 0.0000 | |
| 3 | K | E | 0.0000 | |
| 4 | G | E | 0.0000 | |
| 5 | H | E | -2.1152 | |
| 6 | G | E | -1.5131 | |
| 7 | G | E | -1.5237 | |
| 1 | G | F | -2.4715 | |
| 2 | G | F | -2.0801 | |
| 3 | K | F | -2.9831 | |
| 4 | G | F | 0.0000 | |
| 5 | H | F | -3.3428 | |
| 6 | G | F | -2.4204 | |
| 7 | G | F | -2.3315 | |
| 1 | G | G | 0.0000 | |
| 2 | G | G | -2.5675 | |
| 3 | K | G | -3.7747 | |
| 4 | G | G | 0.0000 | |
| 5 | H | G | -3.5462 | |
| 6 | G | G | -2.5720 | |
| 7 | G | G | -2.0441 | |
| 1 | G | H | 0.0000 | |
| 2 | G | H | -3.0073 | |
| 3 | K | H | -3.8799 | |
| 4 | G | H | 0.0000 | |
| 5 | H | H | -2.7225 | |
| 6 | G | H | -1.7573 | |
| 7 | G | H | -1.0850 | |
| 1 | G | I | -2.7389 | |
| 2 | G | I | 0.0000 | |
| 3 | K | I | -3.1833 | |
| 4 | G | I | 0.0000 | |
| 5 | H | I | -2.2747 | |
| 6 | G | I | -2.3336 | |
| 7 | G | I | -1.3822 | |
| 1 | G | J | -1.2660 | |
| 2 | G | J | -1.9260 | |
| 3 | K | J | -2.9977 | |
| 4 | G | J | 0.0000 | |
| 5 | H | J | 0.0000 | |
| 6 | G | J | 0.0000 | |
| 7 | G | J | 0.0000 | |
| 1 | G | K | -1.4722 | |
| 2 | G | K | -1.9504 | |
| 3 | K | K | -2.6188 | |
| 4 | G | K | -2.1220 | |
| 5 | H | K | -2.1671 | |
| 6 | G | K | 0.0000 | |
| 7 | G | K | 0.0000 | |
| 1 | G | L | -1.5309 | |
| 2 | G | L | -1.9153 | |
| 3 | K | L | -2.4370 | |
| 4 | G | L | -1.9890 | |
| 5 | H | L | -2.1368 | |
| 6 | G | L | 0.0000 | |
| 7 | G | L | 0.0000 |