| Chain sequence(s) |
A: EDEDEDEDEDEDGGKGHFG
C: EDEDEDEDEDEDGGKGHFG B: EDEDEDEDEDEDGGKGHFG E: EDEDEDEDEDEDGGKGHFG D: EDEDEDEDEDEDGGKGHFG G: EDEDEDEDEDEDGGKGHFG F: EDEDEDEDEDEDGGKGHFG I: EDEDEDEDEDEDGGKGHFG H: EDEDEDEDEDEDGGKGHFG K: EDEDEDEDEDEDGGKGHFG J: EDEDEDEDEDEDGGKGHFG L: EDEDEDEDEDEDGGKGHFG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:10:22)
[INFO] Main: Simulation completed successfully. (00:10:25)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | A | -4.4452 | |
| 2 | D | A | -4.5307 | |
| 3 | E | A | -5.1731 | |
| 4 | D | A | 0.0000 | |
| 5 | E | A | -4.9813 | |
| 6 | D | A | 0.0000 | |
| 7 | E | A | -5.0603 | |
| 8 | D | A | -4.1636 | |
| 9 | E | A | -5.3185 | |
| 10 | D | A | 0.0000 | |
| 11 | E | A | -4.7992 | |
| 12 | D | A | 0.0000 | |
| 13 | G | A | -2.1098 | |
| 14 | G | A | 0.0000 | |
| 15 | K | A | -1.3353 | |
| 16 | G | A | 0.0000 | |
| 17 | H | A | 0.0000 | |
| 18 | F | A | 0.0000 | |
| 19 | G | A | -0.2024 | |
| 1 | E | B | -4.1464 | |
| 2 | D | B | -4.5826 | |
| 3 | E | B | -5.1593 | |
| 4 | D | B | -4.4043 | |
| 5 | E | B | -4.4425 | |
| 6 | D | B | -3.2633 | |
| 7 | E | B | -4.2475 | |
| 8 | D | B | -3.4782 | |
| 9 | E | B | -4.4207 | |
| 10 | D | B | -3.5791 | |
| 11 | E | B | -4.1025 | |
| 12 | D | B | -2.5201 | |
| 13 | G | B | -1.8881 | |
| 14 | G | B | -1.1520 | |
| 15 | K | B | -1.8139 | |
| 16 | G | B | -2.1429 | |
| 17 | H | B | 0.0000 | |
| 18 | F | B | 0.2724 | |
| 19 | G | B | -0.1177 | |
| 1 | E | C | -4.1830 | |
| 2 | D | C | -4.6207 | |
| 3 | E | C | -4.8321 | |
| 4 | D | C | -3.7443 | |
| 5 | E | C | -3.7940 | |
| 6 | D | C | -2.6446 | |
| 7 | E | C | -4.0559 | |
| 8 | D | C | -3.2924 | |
| 9 | E | C | -4.6500 | |
| 10 | D | C | -3.9603 | |
| 11 | E | C | -4.2072 | |
| 12 | D | C | -2.6765 | |
| 13 | G | C | -1.9497 | |
| 14 | G | C | -1.2874 | |
| 15 | K | C | -2.3190 | |
| 16 | G | C | -2.8756 | |
| 17 | H | C | -1.0297 | |
| 18 | F | C | -0.3376 | |
| 19 | G | C | -0.5197 | |
| 1 | E | D | -4.5282 | |
| 2 | D | D | -4.4888 | |
| 3 | E | D | -4.7212 | |
| 4 | D | D | 0.0000 | |
| 5 | E | D | -4.0484 | |
| 6 | D | D | 0.0000 | |
| 7 | E | D | -4.8029 | |
| 8 | D | D | -4.0880 | |
| 9 | E | D | -5.5632 | |
| 10 | D | D | 0.0000 | |
| 11 | E | D | -4.8636 | |
| 12 | D | D | 0.0000 | |
| 13 | G | D | -2.1038 | |
| 14 | G | D | 0.0000 | |
| 15 | K | D | -1.5878 | |
| 16 | G | D | 0.0000 | |
| 17 | H | D | 0.0000 | |
| 18 | F | D | 0.0000 | |
| 19 | G | D | -0.3633 | |
| 1 | E | E | -4.0532 | |
| 2 | D | E | -3.7295 | |
| 3 | E | E | -3.7234 | |
| 4 | D | E | 0.0000 | |
| 5 | E | E | -3.3399 | |
| 6 | D | E | 0.0000 | |
| 7 | E | E | -4.5728 | |
| 8 | D | E | -3.7633 | |
| 9 | E | E | -5.3059 | |
| 10 | D | E | 0.0000 | |
| 11 | E | E | -4.5994 | |
| 12 | D | E | 0.0000 | |
| 13 | G | E | -1.9327 | |
| 14 | G | E | 0.0000 | |
| 15 | K | E | -1.3550 | |
| 16 | G | E | 0.0000 | |
| 17 | H | E | 0.0000 | |
| 18 | F | E | 0.0000 | |
| 19 | G | E | -0.5659 | |
| 1 | E | F | -4.0121 | |
| 2 | D | F | -3.4717 | |
| 3 | E | F | -3.7632 | |
| 4 | D | F | 0.0000 | |
| 5 | E | F | -3.6317 | |
| 6 | D | F | 0.0000 | |
| 7 | E | F | -4.5072 | |
| 8 | D | F | 0.0000 | |
| 9 | E | F | -5.0346 | |
| 10 | D | F | 0.0000 | |
| 11 | E | F | -4.6216 | |
| 12 | D | F | 0.0000 | |
| 13 | G | F | -1.9484 | |
| 14 | G | F | 0.0000 | |
| 15 | K | F | -1.5749 | |
| 16 | G | F | 0.0000 | |
| 17 | H | F | 0.0000 | |
| 18 | F | F | 0.0000 | |
| 19 | G | F | -0.5683 | |
| 1 | E | G | -4.4887 | |
| 2 | D | G | -4.3195 | |
| 3 | E | G | -4.8020 | |
| 4 | D | G | 0.0000 | |
| 5 | E | G | -4.5616 | |
| 6 | D | G | 0.0000 | |
| 7 | E | G | -5.0343 | |
| 8 | D | G | 0.0000 | |
| 9 | E | G | -5.5202 | |
| 10 | D | G | 0.0000 | |
| 11 | E | G | -4.9261 | |
| 12 | D | G | 0.0000 | |
| 13 | G | G | -2.2764 | |
| 14 | G | G | 0.0000 | |
| 15 | K | G | -2.5077 | |
| 16 | G | G | 0.0000 | |
| 17 | H | G | 0.0000 | |
| 18 | F | G | 0.0000 | |
| 19 | G | G | -0.8971 | |
| 1 | E | H | -3.9056 | |
| 2 | D | H | -4.5967 | |
| 3 | E | H | -4.8721 | |
| 4 | D | H | -4.2227 | |
| 5 | E | H | -4.4049 | |
| 6 | D | H | -3.6100 | |
| 7 | E | H | -4.6301 | |
| 8 | D | H | -3.9759 | |
| 9 | E | H | -4.9500 | |
| 10 | D | H | -4.4805 | |
| 11 | E | H | -4.4671 | |
| 12 | D | H | -3.0600 | |
| 13 | G | H | -2.1772 | |
| 14 | G | H | -1.9405 | |
| 15 | K | H | -3.0394 | |
| 16 | G | H | -2.9447 | |
| 17 | H | H | -1.3848 | |
| 18 | F | H | -0.5129 | |
| 19 | G | H | -1.1088 | |
| 1 | E | I | -4.0653 | |
| 2 | D | I | -4.9391 | |
| 3 | E | I | -5.2045 | |
| 4 | D | I | -4.5663 | |
| 5 | E | I | -4.5623 | |
| 6 | D | I | -3.5303 | |
| 7 | E | I | -4.4108 | |
| 8 | D | I | -3.8628 | |
| 9 | E | I | -4.8257 | |
| 10 | D | I | -4.5722 | |
| 11 | E | I | -4.4964 | |
| 12 | D | I | -3.1513 | |
| 13 | G | I | -2.1787 | |
| 14 | G | I | -1.9611 | |
| 15 | K | I | -2.5420 | |
| 16 | G | I | -2.6592 | |
| 17 | H | I | -1.5118 | |
| 18 | F | I | -1.0904 | |
| 19 | G | I | -1.2134 | |
| 1 | E | J | -4.6156 | |
| 2 | D | J | -4.4530 | |
| 3 | E | J | -5.1028 | |
| 4 | D | J | 0.0000 | |
| 5 | E | J | -5.0225 | |
| 6 | D | J | 0.0000 | |
| 7 | E | J | -5.4306 | |
| 8 | D | J | -4.6067 | |
| 9 | E | J | -5.6558 | |
| 10 | D | J | 0.0000 | |
| 11 | E | J | -5.0474 | |
| 12 | D | J | 0.0000 | |
| 13 | G | J | -2.3147 | |
| 14 | G | J | 0.0000 | |
| 15 | K | J | -1.8640 | |
| 16 | G | J | 0.0000 | |
| 17 | H | J | 0.0000 | |
| 18 | F | J | 0.0000 | |
| 19 | G | J | -1.0187 | |
| 1 | E | K | -4.0825 | |
| 2 | D | K | -3.6586 | |
| 3 | E | K | -4.2370 | |
| 4 | D | K | 0.0000 | |
| 5 | E | K | -4.3524 | |
| 6 | D | K | 0.0000 | |
| 7 | E | K | -4.9768 | |
| 8 | D | K | -4.0780 | |
| 9 | E | K | -5.1350 | |
| 10 | D | K | 0.0000 | |
| 11 | E | K | -4.7240 | |
| 12 | D | K | 0.0000 | |
| 13 | G | K | -2.0118 | |
| 14 | G | K | 0.0000 | |
| 15 | K | K | -1.3186 | |
| 16 | G | K | 0.0000 | |
| 17 | H | K | 0.0000 | |
| 18 | F | K | 0.0000 | |
| 19 | G | K | -0.6868 | |
| 1 | E | L | -4.0708 | |
| 2 | D | L | -3.6229 | |
| 3 | E | L | -4.1397 | |
| 4 | D | L | 0.0000 | |
| 5 | E | L | -4.0184 | |
| 6 | D | L | 0.0000 | |
| 7 | E | L | -4.7208 | |
| 8 | D | L | 0.0000 | |
| 9 | E | L | -5.0453 | |
| 10 | D | L | 0.0000 | |
| 11 | E | L | -4.6915 | |
| 12 | D | L | 0.0000 | |
| 13 | G | L | -1.9699 | |
| 14 | G | L | 0.0000 | |
| 15 | K | L | -1.2119 | |
| 16 | G | L | 0.0000 | |
| 17 | H | L | 0.0000 | |
| 18 | F | L | 0.0000 | |
| 19 | G | L | -0.6005 |