Project name: 4a32cb130bc0023

Status: done

Started: 2024-06-27 05:53:47
Settings
Chain sequence(s) A: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:15)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:16)
Show buried residues

Minimal score value
-2.6314
Maximal score value
3.9372
Average score
0.0641
Total score value
2.693

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D A -2.2820
2 A A -2.1224
3 E A -2.5166
4 F A -0.7949
5 R A -2.6136
6 H A -2.6314
7 D A -1.8388
8 S A -1.1310
9 G A -0.7745
10 Y A -0.0957
11 E A -1.3702
12 V A -1.2345
13 H A -1.6176
14 H A -1.4846
15 Q A -0.7025
16 K A -0.6150
17 L A 1.6523
18 V A 1.7237
19 F A 2.5511
20 F A 2.3830
21 A A 0.8779
22 E A -1.0541
23 D A -1.6269
24 V A -0.5957
25 G A -1.3095
26 S A -1.8607
27 N A -2.0491
28 K A -1.9656
29 G A -1.0160
30 A A -0.1631
31 I A 0.8795
32 I A 2.3620
33 G A 1.7993
34 L A 2.5265
35 M A 2.1946
36 V A 3.2939
37 G A 1.7936
38 G A 1.6464
39 V A 3.5378
40 V A 3.9372
41 I A 3.3166
42 A A 1.6836
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018