Project name: query_structure

Status: done

Started: 2026-03-17 01:07:51
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Chain sequence(s) A: VSDVPRDLEVVAATPTSLLISWDAGGDYVGYYVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTTYNGPWIYGYEEIPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:52)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:52)
Show buried residues

Minimal score value
-3.0122
Maximal score value
3.0353
Average score
-0.4158
Total score value
-41.998

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.6342
2 S A 0.1970
3 D A -0.8770
4 V A -0.7820
5 P A 0.0000
6 R A -2.4895
7 D A -3.0122
8 L A 0.0000
9 E A -2.0199
10 V A 0.1039
11 V A 1.5479
12 A A 0.9055
13 A A 0.3260
14 T A -0.3387
15 P A -1.1169
16 T A -0.9962
17 S A -0.5247
18 L A 0.0000
19 L A 0.7666
20 I A 0.0000
21 S A -1.0158
22 W A 0.0000
23 D A -2.7705
24 A A -1.7471
25 G A -1.2884
26 G A -0.6726
27 D A -0.7422
28 Y A 1.5086
29 V A 1.8377
30 G A 0.7779
31 Y A 0.7338
32 Y A 0.6668
33 V A -0.1144
34 R A -0.0672
35 Y A -0.0697
36 Y A 0.0000
37 R A -0.7697
38 I A 0.0000
39 T A 0.0000
40 Y A -0.4572
41 G A -0.7675
42 E A -1.6556
43 T A -1.2817
44 G A -1.2557
45 G A -1.4490
46 N A -1.5734
47 S A -0.9382
48 P A -0.4330
49 V A 0.2406
50 Q A -1.2243
51 E A -1.8297
52 F A -0.7120
53 T A -0.1745
54 V A -0.3148
55 P A -0.6652
56 G A -0.5819
57 S A -0.9469
58 K A -1.7824
59 S A -1.2498
60 T A -0.6709
61 A A 0.0000
62 T A 0.2618
63 I A 0.0000
64 S A -0.6627
65 G A -1.0324
66 L A 0.0000
67 K A -2.3735
68 P A -1.6634
69 G A -1.4477
70 V A -1.4224
71 D A -2.0783
72 Y A 0.0000
73 T A -0.7918
74 I A 0.0000
75 T A 0.0000
76 V A 0.0000
77 Y A -0.3469
78 A A 0.0000
79 V A 0.0000
80 T A 0.0000
81 T A 0.0000
82 Y A 1.1721
83 N A 0.2480
84 G A 0.7658
85 P A 0.7202
86 W A 2.0918
87 I A 3.0353
88 Y A 2.3063
89 G A 1.4428
90 Y A 0.7009
91 E A -1.1623
92 E A -1.6801
93 I A -0.7626
94 P A -0.5770
95 I A -0.0522
96 S A -0.6382
97 I A -0.7344
98 N A -1.7219
99 Y A -1.4560
100 R A -2.5126
101 T A -1.4947
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Laboratory of Theory of Biopolymers 2018