Project name: query_structure

Status: done

Started: 2026-03-16 23:45:04
Settings
Chain sequence(s) A: GTCSTLGCTCKPLRCKAPRMVRCGETCGG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:03)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:03)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:03)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:03)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:03)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:52)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:53)
Show buried residues

Minimal score value
-2.1669
Maximal score value
1.4626
Average score
-0.7207
Total score value
-20.8994

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.7246
2 T A -0.4216
3 C A -0.6617
4 S A -0.0496
5 T A 0.4650
6 L A 1.4626
7 G A 0.2984
8 C A 0.0195
9 T A -0.8531
10 C A -0.9965
11 K A -1.6239
12 P A -0.6633
13 L A -0.0808
14 R A -2.0307
15 C A -1.6916
16 K A -2.1669
17 A A -0.9843
18 P A -0.9390
19 R A -1.4952
20 M A 0.4899
21 V A 0.7190
22 R A -1.2215
23 C A -1.0576
24 G A -1.2916
25 E A -1.9534
26 T A -1.0409
27 C A -0.9530
28 G A -0.9251
29 G A -0.5279
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Laboratory of Theory of Biopolymers 2018