Project name: obj1 [mutate: ER1C, VR5C, GN9C, QD13C, GC15C, AQ24C, SE31C, SG35C, KI43C, GH56C, YG60C, KL65C, RF67C, NP74C, YW80C, MV83C, AY88C, YS95C, DW101C, WF110C, LM115C, TC117C, SA120C]

Status: done

Started: 2025-02-11 08:10:08
Settings
Chain sequence(s) C: EVQLVESGGGLVQPGGSLRLSCAASDFTFRSYEMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAIYYCARLRDGFNKGFDYWGQGTLVTVSS
input PDB
Selected Chain(s) C
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues GH56C,NP74C,QD13C,SG35C,SE31C,GC15C,YS95C,GN9C,TC117C,ER1C,VR5C,WF110C,AQ24C,KI43C,RF67C,KL65C,YG60C,LM115C,YW80C,MV83C,AY88C,SA120C,DW101C
Energy difference between WT (input) and mutated protein (by FoldX) 35.4824 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with C chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:24)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:07:23)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:07:51)
[INFO]       Main:     Simulation completed successfully.                                          (00:07:52)
Show buried residues

Minimal score value
-2.6533
Maximal score value
1.5311
Average score
-0.3549
Total score value
-42.5838

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 R C -2.0760 mutated: ER1C
2 V C -0.9096
3 Q C -1.6687
4 L C 0.0000
5 R C -1.4987 mutated: VR5C
6 E C 0.0000
7 S C -0.9630
8 G C -0.9126
9 N C -0.2135 mutated: GN9C
10 G C 0.6993
11 L C 1.2348
12 V C 0.1404
13 D C -1.2456 mutated: QD13C
14 P C -0.5345
15 C C -0.0179 mutated: GC15C
16 G C -0.4459
17 S C -0.7655
18 L C -0.8465
19 R C -1.9961
20 L C 0.0000
21 S C -0.7389
22 C C 0.0000
23 A C -0.9222
24 Q C 0.0000 mutated: AQ24C
25 S C -0.5059
26 D C 0.0000
27 F C 1.3471
28 T C -0.2467
29 F C 0.0000
30 R C -2.6533
31 E C -2.4959 mutated: SE31C
32 Y C -1.3976
33 E C -0.8633
34 M C 0.0000
35 G C 0.0000 mutated: SG35C
36 W C 0.0000
37 V C 0.0000
38 R C 0.0000
39 Q C 0.4146
40 A C 0.1452
41 P C -0.1406
42 G C 0.3306
43 I C 1.5311 mutated: KI43C
44 G C 0.6724
45 L C 1.1707
46 E C 0.1499
47 W C 0.3441
48 V C 0.0000
49 S C 0.0000
50 A C 0.0000
51 I C 0.0000
52 S C -0.9437
53 G C -1.7963
54 S C -1.5245
55 G C -1.1731
56 H C -1.2350 mutated: GH56C
57 S C -0.5510
58 T C -0.0127
59 Y C 0.8822
60 G C 0.4267 mutated: YG60C
61 A C -0.4093
62 D C -1.3736
63 S C -0.7777
64 V C 0.0000
65 L C 1.1161 mutated: KL65C
66 G C 0.4757
67 F C 1.1199 mutated: RF67C
68 F C 0.4630
69 T C 0.1591
70 I C 0.0000
71 S C -0.2749
72 R C 0.0000
73 D C -1.2729
74 P C -1.8408 mutated: NP74C
75 S C -1.4978
76 K C -2.0641
77 N C -1.3916
78 T C -1.1366
79 L C 0.0000
80 W C -0.2890 mutated: YW80C
81 L C 0.0000
82 Q C -0.7914
83 V C 0.0000 mutated: MV83C
84 N C -0.4808
85 S C -0.2081
86 L C 0.0000
87 R C -1.0760
88 Y C -0.1660 mutated: AY88C
89 E C -1.5147
90 D C 0.0000
91 T C 0.0076
92 A C 0.0000
93 I C 0.8049
94 Y C 0.0000
95 S C 0.0000 mutated: YS95C
96 C C 0.0000
97 A C 0.0000
98 R C 0.0000
99 L C 0.0000
100 R C -1.0297
101 W C -0.0198 mutated: DW101C
102 G C -0.4749
103 F C -0.4845
104 N C -1.8182
105 K C -2.1919
106 G C -1.1907
107 F C -0.1062
108 D C -0.5208
109 Y C 0.1175
110 F C 0.8822 mutated: WF110C
111 G C -0.4813
112 Q C -1.2570
113 G C -0.3983
114 T C -0.1605
115 M C 0.8013 mutated: LM115C
116 V C 0.0000
117 C C 0.6046 mutated: TC117C
118 V C 0.0000
119 S C -0.3068
120 A C -0.3241 mutated: SA120C
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018