Chain sequence(s) |
C: EVQLVESGGGLVQPGGSLRLSCAASDFTFRSYEMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAIYYCARLRDGFNKGFDYWGQGTLVTVSS
input PDB |
Selected Chain(s) | C |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
Dynamic mode | No |
Automated mutations | No |
Mutated residues | GH56C,NP74C,QD13C,SG35C,SE31C,GC15C,YS95C,GN9C,TC117C,ER1C,VR5C,WF110C,AQ24C,KI43C,RF67C,KL65C,YG60C,LM115C,YW80C,MV83C,AY88C,SA120C,DW101C |
Energy difference between WT (input) and mutated protein (by FoldX) | 35.4824 kcal/mol
CAUTION: Your mutation/s can destabilize the protein structure |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with C chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] FoldX: Starting FoldX energy minimalization (00:00:00) [INFO] FoldX: Building mutant model (00:00:24) [INFO] FoldX: Starting FoldX energy minimalization (00:07:23) [INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:07:51) [INFO] Main: Simulation completed successfully. (00:07:52) |
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan3D score | mutation |
---|---|---|---|---|
residue index | residue name | chain | Aggrescan3D score | |
1 | R | C | -2.0760 | mutated: ER1C |
2 | V | C | -0.9096 | |
3 | Q | C | -1.6687 | |
4 | L | C | 0.0000 | |
5 | R | C | -1.4987 | mutated: VR5C |
6 | E | C | 0.0000 | |
7 | S | C | -0.9630 | |
8 | G | C | -0.9126 | |
9 | N | C | -0.2135 | mutated: GN9C |
10 | G | C | 0.6993 | |
11 | L | C | 1.2348 | |
12 | V | C | 0.1404 | |
13 | D | C | -1.2456 | mutated: QD13C |
14 | P | C | -0.5345 | |
15 | C | C | -0.0179 | mutated: GC15C |
16 | G | C | -0.4459 | |
17 | S | C | -0.7655 | |
18 | L | C | -0.8465 | |
19 | R | C | -1.9961 | |
20 | L | C | 0.0000 | |
21 | S | C | -0.7389 | |
22 | C | C | 0.0000 | |
23 | A | C | -0.9222 | |
24 | Q | C | 0.0000 | mutated: AQ24C |
25 | S | C | -0.5059 | |
26 | D | C | 0.0000 | |
27 | F | C | 1.3471 | |
28 | T | C | -0.2467 | |
29 | F | C | 0.0000 | |
30 | R | C | -2.6533 | |
31 | E | C | -2.4959 | mutated: SE31C |
32 | Y | C | -1.3976 | |
33 | E | C | -0.8633 | |
34 | M | C | 0.0000 | |
35 | G | C | 0.0000 | mutated: SG35C |
36 | W | C | 0.0000 | |
37 | V | C | 0.0000 | |
38 | R | C | 0.0000 | |
39 | Q | C | 0.4146 | |
40 | A | C | 0.1452 | |
41 | P | C | -0.1406 | |
42 | G | C | 0.3306 | |
43 | I | C | 1.5311 | mutated: KI43C |
44 | G | C | 0.6724 | |
45 | L | C | 1.1707 | |
46 | E | C | 0.1499 | |
47 | W | C | 0.3441 | |
48 | V | C | 0.0000 | |
49 | S | C | 0.0000 | |
50 | A | C | 0.0000 | |
51 | I | C | 0.0000 | |
52 | S | C | -0.9437 | |
53 | G | C | -1.7963 | |
54 | S | C | -1.5245 | |
55 | G | C | -1.1731 | |
56 | H | C | -1.2350 | mutated: GH56C |
57 | S | C | -0.5510 | |
58 | T | C | -0.0127 | |
59 | Y | C | 0.8822 | |
60 | G | C | 0.4267 | mutated: YG60C |
61 | A | C | -0.4093 | |
62 | D | C | -1.3736 | |
63 | S | C | -0.7777 | |
64 | V | C | 0.0000 | |
65 | L | C | 1.1161 | mutated: KL65C |
66 | G | C | 0.4757 | |
67 | F | C | 1.1199 | mutated: RF67C |
68 | F | C | 0.4630 | |
69 | T | C | 0.1591 | |
70 | I | C | 0.0000 | |
71 | S | C | -0.2749 | |
72 | R | C | 0.0000 | |
73 | D | C | -1.2729 | |
74 | P | C | -1.8408 | mutated: NP74C |
75 | S | C | -1.4978 | |
76 | K | C | -2.0641 | |
77 | N | C | -1.3916 | |
78 | T | C | -1.1366 | |
79 | L | C | 0.0000 | |
80 | W | C | -0.2890 | mutated: YW80C |
81 | L | C | 0.0000 | |
82 | Q | C | -0.7914 | |
83 | V | C | 0.0000 | mutated: MV83C |
84 | N | C | -0.4808 | |
85 | S | C | -0.2081 | |
86 | L | C | 0.0000 | |
87 | R | C | -1.0760 | |
88 | Y | C | -0.1660 | mutated: AY88C |
89 | E | C | -1.5147 | |
90 | D | C | 0.0000 | |
91 | T | C | 0.0076 | |
92 | A | C | 0.0000 | |
93 | I | C | 0.8049 | |
94 | Y | C | 0.0000 | |
95 | S | C | 0.0000 | mutated: YS95C |
96 | C | C | 0.0000 | |
97 | A | C | 0.0000 | |
98 | R | C | 0.0000 | |
99 | L | C | 0.0000 | |
100 | R | C | -1.0297 | |
101 | W | C | -0.0198 | mutated: DW101C |
102 | G | C | -0.4749 | |
103 | F | C | -0.4845 | |
104 | N | C | -1.8182 | |
105 | K | C | -2.1919 | |
106 | G | C | -1.1907 | |
107 | F | C | -0.1062 | |
108 | D | C | -0.5208 | |
109 | Y | C | 0.1175 | |
110 | F | C | 0.8822 | mutated: WF110C |
111 | G | C | -0.4813 | |
112 | Q | C | -1.2570 | |
113 | G | C | -0.3983 | |
114 | T | C | -0.1605 | |
115 | M | C | 0.8013 | mutated: LM115C |
116 | V | C | 0.0000 | |
117 | C | C | 0.6046 | mutated: TC117C |
118 | V | C | 0.0000 | |
119 | S | C | -0.3068 | |
120 | A | C | -0.3241 | mutated: SA120C |