| Chain sequence(s) |
A: QVQLQESGGGLVQAGGSLRLSCAASGYISDAYYMGWYRQAPGKEREFVATITHGTNTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVFELRGFLWDWYYTYWGQGTQVTVSSLE
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:58)
[INFO] Main: Simulation completed successfully. (00:01:58)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.2657 | |
| 2 | V | A | -0.7228 | |
| 3 | Q | A | -1.7693 | |
| 4 | L | A | 0.0000 | |
| 5 | Q | A | -1.7286 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -1.0634 | |
| 8 | G | A | -0.9779 | |
| 9 | G | A | -0.8044 | |
| 10 | G | A | -0.0506 | |
| 11 | L | A | 1.0704 | |
| 12 | V | A | 0.2462 | |
| 13 | Q | A | -1.1982 | |
| 14 | A | A | -1.3877 | |
| 15 | G | A | -1.2990 | |
| 16 | G | A | -0.8581 | |
| 17 | S | A | -1.2203 | |
| 18 | L | A | -1.0379 | |
| 19 | R | A | -2.1172 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.8382 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -1.1796 | |
| 24 | A | A | -0.7527 | |
| 25 | S | A | -0.9807 | |
| 26 | G | A | -0.1725 | |
| 27 | Y | A | 0.5607 | |
| 28 | I | A | 0.1341 | |
| 29 | S | A | -0.8137 | |
| 30 | D | A | -1.9426 | |
| 31 | A | A | -1.1632 | |
| 32 | Y | A | -0.7585 | |
| 33 | Y | A | -0.2494 | |
| 34 | M | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | 0.0000 | |
| 38 | R | A | -1.8512 | |
| 39 | Q | A | -2.6153 | |
| 40 | A | A | -2.2911 | |
| 41 | P | A | -1.4775 | |
| 42 | G | A | -1.9920 | |
| 43 | K | A | -3.5953 | |
| 44 | E | A | -3.9611 | |
| 45 | R | A | -3.5142 | |
| 46 | E | A | -3.0959 | |
| 47 | F | A | -1.1332 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | T | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | T | A | 0.0000 | |
| 53 | H | A | -1.6567 | |
| 54 | G | A | -1.4134 | |
| 55 | T | A | -1.0117 | |
| 56 | N | A | -1.2926 | |
| 57 | T | A | -0.1978 | |
| 58 | Y | A | 0.5037 | |
| 59 | Y | A | -0.2644 | |
| 60 | A | A | -1.2484 | |
| 61 | D | A | -2.3002 | |
| 62 | S | A | -1.7903 | |
| 63 | V | A | 0.0000 | |
| 64 | K | A | -2.4962 | |
| 65 | G | A | -1.7950 | |
| 66 | R | A | -1.5105 | |
| 67 | F | A | 0.0000 | |
| 68 | T | A | -0.7354 | |
| 69 | I | A | 0.0000 | |
| 70 | S | A | -0.6010 | |
| 71 | R | A | -1.0868 | |
| 72 | D | A | -1.5435 | |
| 73 | N | A | -1.9009 | |
| 74 | A | A | -1.3820 | |
| 75 | K | A | -2.1038 | |
| 76 | N | A | -1.3970 | |
| 77 | T | A | -1.2311 | |
| 78 | V | A | 0.0000 | |
| 79 | Y | A | -0.5447 | |
| 80 | L | A | 0.0000 | |
| 81 | Q | A | -1.2213 | |
| 82 | M | A | 0.0000 | |
| 83 | N | A | -1.4064 | |
| 84 | S | A | -1.1951 | |
| 85 | L | A | 0.0000 | |
| 86 | K | A | -2.1821 | |
| 87 | P | A | -1.6114 | |
| 88 | E | A | -2.2528 | |
| 89 | D | A | 0.0000 | |
| 90 | T | A | -0.9207 | |
| 91 | A | A | 0.0000 | |
| 92 | V | A | -0.7465 | |
| 93 | Y | A | 0.0000 | |
| 94 | Y | A | -0.8058 | |
| 95 | C | A | 0.0000 | |
| 96 | A | A | 0.0000 | |
| 97 | V | A | 0.0000 | |
| 98 | F | A | 0.0000 | |
| 99 | E | A | -0.5551 | |
| 100 | L | A | -0.0747 | |
| 101 | R | A | -1.3100 | |
| 102 | G | A | 0.1216 | |
| 103 | F | A | 2.1932 | |
| 104 | L | A | 2.0966 | |
| 105 | W | A | 1.3591 | |
| 106 | D | A | -0.3753 | |
| 107 | W | A | 0.4331 | |
| 108 | Y | A | 1.0207 | |
| 109 | Y | A | 1.5660 | |
| 110 | T | A | 1.0765 | |
| 111 | Y | A | 0.6459 | |
| 112 | W | A | 0.1241 | |
| 113 | G | A | -0.8988 | |
| 114 | Q | A | -1.6127 | |
| 115 | G | A | -1.0878 | |
| 116 | T | A | 0.0000 | |
| 117 | Q | A | -1.2098 | |
| 118 | V | A | 0.0000 | |
| 119 | T | A | -0.2484 | |
| 120 | V | A | 0.0000 | |
| 121 | S | A | -0.4261 | |
| 122 | S | A | -0.4420 | |
| 123 | L | A | 0.3232 | |
| 124 | E | A | -1.3893 |