Project name: query_structure

Status: done

Started: 2026-03-17 00:26:31
Settings
Chain sequence(s) A: QVQLQESGGGLVQAGGSLRLSCAASGYISDAYYMGWYRQAPGKEREFVATITHGTNTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVFELRGFLWDWYYTYWGQGTQVTVSSLE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:58)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:58)
Show buried residues

Minimal score value
-3.9611
Maximal score value
2.1932
Average score
-0.7248
Total score value
-89.8794

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.2657
2 V A -0.7228
3 Q A -1.7693
4 L A 0.0000
5 Q A -1.7286
6 E A 0.0000
7 S A -1.0634
8 G A -0.9779
9 G A -0.8044
10 G A -0.0506
11 L A 1.0704
12 V A 0.2462
13 Q A -1.1982
14 A A -1.3877
15 G A -1.2990
16 G A -0.8581
17 S A -1.2203
18 L A -1.0379
19 R A -2.1172
20 L A 0.0000
21 S A -0.8382
22 C A 0.0000
23 A A -1.1796
24 A A -0.7527
25 S A -0.9807
26 G A -0.1725
27 Y A 0.5607
28 I A 0.1341
29 S A -0.8137
30 D A -1.9426
31 A A -1.1632
32 Y A -0.7585
33 Y A -0.2494
34 M A 0.0000
35 G A 0.0000
36 W A 0.0000
37 Y A 0.0000
38 R A -1.8512
39 Q A -2.6153
40 A A -2.2911
41 P A -1.4775
42 G A -1.9920
43 K A -3.5953
44 E A -3.9611
45 R A -3.5142
46 E A -3.0959
47 F A -1.1332
48 V A 0.0000
49 A A 0.0000
50 T A 0.0000
51 I A 0.0000
52 T A 0.0000
53 H A -1.6567
54 G A -1.4134
55 T A -1.0117
56 N A -1.2926
57 T A -0.1978
58 Y A 0.5037
59 Y A -0.2644
60 A A -1.2484
61 D A -2.3002
62 S A -1.7903
63 V A 0.0000
64 K A -2.4962
65 G A -1.7950
66 R A -1.5105
67 F A 0.0000
68 T A -0.7354
69 I A 0.0000
70 S A -0.6010
71 R A -1.0868
72 D A -1.5435
73 N A -1.9009
74 A A -1.3820
75 K A -2.1038
76 N A -1.3970
77 T A -1.2311
78 V A 0.0000
79 Y A -0.5447
80 L A 0.0000
81 Q A -1.2213
82 M A 0.0000
83 N A -1.4064
84 S A -1.1951
85 L A 0.0000
86 K A -2.1821
87 P A -1.6114
88 E A -2.2528
89 D A 0.0000
90 T A -0.9207
91 A A 0.0000
92 V A -0.7465
93 Y A 0.0000
94 Y A -0.8058
95 C A 0.0000
96 A A 0.0000
97 V A 0.0000
98 F A 0.0000
99 E A -0.5551
100 L A -0.0747
101 R A -1.3100
102 G A 0.1216
103 F A 2.1932
104 L A 2.0966
105 W A 1.3591
106 D A -0.3753
107 W A 0.4331
108 Y A 1.0207
109 Y A 1.5660
110 T A 1.0765
111 Y A 0.6459
112 W A 0.1241
113 G A -0.8988
114 Q A -1.6127
115 G A -1.0878
116 T A 0.0000
117 Q A -1.2098
118 V A 0.0000
119 T A -0.2484
120 V A 0.0000
121 S A -0.4261
122 S A -0.4420
123 L A 0.3232
124 E A -1.3893
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Laboratory of Theory of Biopolymers 2018