| Chain sequence(s) |
A: FFKGHGF
C: FFKGHGF B: FFKGHGF E: FFKGHGF D: FFKGHGF G: FFKGHGF F: FFKGHGF I: FFKGHGF H: FFKGHGF K: FFKGHGF J: FFKGHGF M: FFKGHGF L: FFKGHGF O: FFKGHGF N: FFKGHGF Q: FFKGHGF P: FFKGHGF S: FFKGHGF R: FFKGHGF T: FFKGHGF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:09:41)
[INFO] Main: Simulation completed successfully. (00:09:46)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 2.9679 | |
| 2 | F | A | 0.0000 | |
| 3 | K | A | -1.2243 | |
| 4 | G | A | 0.0000 | |
| 5 | H | A | -0.5322 | |
| 6 | G | A | 0.0000 | |
| 7 | F | A | 2.5772 | |
| 1 | F | B | 2.1579 | |
| 2 | F | B | 0.0000 | |
| 3 | K | B | -1.1558 | |
| 4 | G | B | 0.0000 | |
| 5 | H | B | -0.4031 | |
| 6 | G | B | 0.0000 | |
| 7 | F | B | 2.6004 | |
| 1 | F | C | 2.3876 | |
| 2 | F | C | 0.0000 | |
| 3 | K | C | -1.1627 | |
| 4 | G | C | 0.0000 | |
| 5 | H | C | -0.4179 | |
| 6 | G | C | 0.0000 | |
| 7 | F | C | 2.5740 | |
| 1 | F | D | 1.9436 | |
| 2 | F | D | 0.0000 | |
| 3 | K | D | -1.2604 | |
| 4 | G | D | 0.0000 | |
| 5 | H | D | -0.3372 | |
| 6 | G | D | 0.0000 | |
| 7 | F | D | 2.6011 | |
| 1 | F | E | 2.0241 | |
| 2 | F | E | 0.0000 | |
| 3 | K | E | -1.2213 | |
| 4 | G | E | 0.0000 | |
| 5 | H | E | -0.4395 | |
| 6 | G | E | 0.0000 | |
| 7 | F | E | 2.6566 | |
| 1 | F | F | 2.3011 | |
| 2 | F | F | 0.0000 | |
| 3 | K | F | -1.2742 | |
| 4 | G | F | 0.0000 | |
| 5 | H | F | -0.5198 | |
| 6 | G | F | 0.0000 | |
| 7 | F | F | 2.8673 | |
| 1 | F | G | 2.6202 | |
| 2 | F | G | 0.0000 | |
| 3 | K | G | -1.1727 | |
| 4 | G | G | 0.0000 | |
| 5 | H | G | -0.6128 | |
| 6 | G | G | 0.0000 | |
| 7 | F | G | 3.0447 | |
| 1 | F | H | 2.9595 | |
| 2 | F | H | 1.2440 | |
| 3 | K | H | -1.0915 | |
| 4 | G | H | 0.0000 | |
| 5 | H | H | -0.9824 | |
| 6 | G | H | 0.7804 | |
| 7 | F | H | 2.9227 | |
| 1 | F | I | 2.8615 | |
| 2 | F | I | 0.0000 | |
| 3 | K | I | -2.0097 | |
| 4 | G | I | -2.0517 | |
| 5 | H | I | -0.9020 | |
| 6 | G | I | 0.0000 | |
| 7 | F | I | 3.2734 | |
| 1 | F | J | 2.4987 | |
| 2 | F | J | 0.0000 | |
| 3 | K | J | -1.7559 | |
| 4 | G | J | 0.0000 | |
| 5 | H | J | -0.7027 | |
| 6 | G | J | 0.0000 | |
| 7 | F | J | 2.9578 | |
| 1 | F | K | 2.1080 | |
| 2 | F | K | 0.0000 | |
| 3 | K | K | -1.7657 | |
| 4 | G | K | 0.0000 | |
| 5 | H | K | -0.6028 | |
| 6 | G | K | 0.0000 | |
| 7 | F | K | 2.6278 | |
| 1 | F | L | 2.4529 | |
| 2 | F | L | 0.0000 | |
| 3 | K | L | -1.3847 | |
| 4 | G | L | 0.0000 | |
| 5 | H | L | -0.4635 | |
| 6 | G | L | 0.0000 | |
| 7 | F | L | 2.5993 | |
| 1 | F | M | 2.2328 | |
| 2 | F | M | 0.0000 | |
| 3 | K | M | -1.1693 | |
| 4 | G | M | 0.0000 | |
| 5 | H | M | -0.3156 | |
| 6 | G | M | 0.0000 | |
| 7 | F | M | 2.6019 | |
| 1 | F | N | 1.8732 | |
| 2 | F | N | 0.0000 | |
| 3 | K | N | -1.3167 | |
| 4 | G | N | 0.0000 | |
| 5 | H | N | -0.3478 | |
| 6 | G | N | 0.0000 | |
| 7 | F | N | 2.6516 | |
| 1 | F | O | 2.1864 | |
| 2 | F | O | 0.0000 | |
| 3 | K | O | -1.0909 | |
| 4 | G | O | 0.0000 | |
| 5 | H | O | -0.5479 | |
| 6 | G | O | 0.0000 | |
| 7 | F | O | 2.7373 | |
| 1 | F | P | 2.3779 | |
| 2 | F | P | 0.0000 | |
| 3 | K | P | -0.8778 | |
| 4 | G | P | 0.0000 | |
| 5 | H | P | -0.5457 | |
| 6 | G | P | 0.0000 | |
| 7 | F | P | 3.2913 | |
| 1 | F | Q | 2.9535 | |
| 2 | F | Q | 0.0000 | |
| 3 | K | Q | -0.7946 | |
| 4 | G | Q | 0.0000 | |
| 5 | H | Q | -0.7977 | |
| 6 | G | Q | 0.0000 | |
| 7 | F | Q | 3.4536 | |
| 1 | F | R | 3.0659 | |
| 2 | F | R | 1.5397 | |
| 3 | K | R | -1.1362 | |
| 4 | G | R | -2.1480 | |
| 5 | H | R | -1.1886 | |
| 6 | G | R | 1.0479 | |
| 7 | F | R | 3.0588 | |
| 1 | F | S | 3.3223 | |
| 2 | F | S | 1.0615 | |
| 3 | K | S | -1.7113 | |
| 4 | G | S | -2.2783 | |
| 5 | H | S | -0.9693 | |
| 6 | G | S | 1.4596 | |
| 7 | F | S | 3.4057 | |
| 1 | F | T | 3.4850 | |
| 2 | F | T | 0.0000 | |
| 3 | K | T | -1.3218 | |
| 4 | G | T | 0.0000 | |
| 5 | H | T | -0.8011 | |
| 6 | G | T | 0.0000 | |
| 7 | F | T | 3.0426 |