Project name: 4b48223bbe9415c

Status: done

Started: 2026-06-27 14:45:47
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Chain sequence(s) A: AEAEAKAKAEAEAKAK
C: AEAEAKAKAEAEAKAK
B: AEAEAKAKAEAEAKAK
E: AEAEAKAKAEAEAKAK
D: AEAEAKAKAEAEAKAK
G: AEAEAKAKAEAEAKAK
F: AEAEAKAKAEAEAKAK
I: AEAEAKAKAEAEAKAK
H: AEAEAKAKAEAEAKAK
K: AEAEAKAKAEAEAKAK
J: AEAEAKAKAEAEAKAK
M: AEAEAKAKAEAEAKAK
L: AEAEAKAKAEAEAKAK
O: AEAEAKAKAEAEAKAK
N: AEAEAKAKAEAEAKAK
Q: AEAEAKAKAEAEAKAK
P: AEAEAKAKAEAEAKAK
S: AEAEAKAKAEAEAKAK
R: AEAEAKAKAEAEAKAK
T: AEAEAKAKAEAEAKAK
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:26:41)
[INFO]       Main:     Simulation completed successfully.                                          (00:26:46)
Show buried residues

Minimal score value
-3.5909
Maximal score value
0.0
Average score
-2.0514
Total score value
-656.4509

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -1.5421
2 E A -2.3202
3 A A -1.8513
4 E A -2.1669
5 A A -2.5083
6 K A -2.7800
7 A A -2.2310
8 K A 0.0000
9 A A -2.0316
10 E A -3.0672
11 A A -2.9591
12 E A -2.8141
13 A A -2.2512
14 K A -3.2545
15 A A -3.0491
16 K A -2.5882
1 A B -1.4659
2 E B -2.4168
3 A B -2.0001
4 E B -2.0800
5 A B -1.9446
6 K B -2.7645
7 A B -2.0413
8 K B -2.1004
9 A B -1.6979
10 E B -1.8423
11 A B 0.0000
12 E B -2.7737
13 A B -1.6317
14 K B 0.0000
15 A B -2.3279
16 K B -2.5282
1 A C -1.3615
2 E C -2.1262
3 A C -1.6022
4 E C -1.7415
5 A C -1.8305
6 K C -1.8261
7 A C -1.7238
8 K C -1.8477
9 A C 0.0000
10 E C -2.9624
11 A C -2.6488
12 E C -2.5730
13 A C -2.6702
14 K C -3.3798
15 A C -2.9646
16 K C -2.9361
1 A D -1.7650
2 E D -2.7220
3 A D -2.1593
4 E D -3.0085
5 A D -2.6130
6 K D -2.7346
7 A D -2.3202
8 K D -2.6850
9 A D 0.0000
10 E D -3.3054
11 A D -2.2114
12 E D -2.6249
13 A D -3.0585
14 K D -3.0102
15 A D -1.9686
16 K D -2.5865
1 A E -1.9026
2 E E -2.3769
3 A E -1.7082
4 E E -1.8435
5 A E 0.0000
6 K E -1.4904
7 A E -1.2559
8 K E 0.0000
9 A E -1.0904
10 E E -1.2442
11 A E 0.0000
12 E E -1.8219
13 A E 0.0000
14 K E -1.8185
15 A E -2.0035
16 K E -2.6709
1 A F -1.9486
2 E F -2.6334
3 A F -2.3080
4 E F -2.7139
5 A F 0.0000
6 K F -1.9412
7 A F -1.8755
8 K F -1.8228
9 A F 0.0000
10 E F -1.6246
11 A F -1.5646
12 E F -1.9884
13 A F -2.2772
14 K F -2.4156
15 A F -1.8430
16 K F -2.4391
1 A G -1.7397
2 E G -3.1115
3 A G -1.9970
4 E G -2.6415
5 A G -2.4490
6 K G -1.9640
7 A G -1.5423
8 K G -1.8223
9 A G -1.2202
10 E G -1.3832
11 A G -1.4448
12 E G -2.0107
13 A G -2.3020
14 K G -2.8314
15 A G -2.0093
16 K G -3.0548
1 A H -1.9378
2 E H -3.2748
3 A H -2.2743
4 E H -2.5986
5 A H 0.0000
6 K H -1.6151
7 A H -1.6524
8 K H -1.5969
9 A H -1.4235
10 E H -1.4596
11 A H -1.5122
12 E H -2.1502
13 A H -2.6070
14 K H -2.9082
15 A H -2.0463
16 K H -2.7594
1 A I -1.5652
2 E I -2.7095
3 A I -2.5115
4 E I -2.7697
5 A I -2.2698
6 K I -3.1234
7 A I -2.5021
8 K I -2.3794
9 A I -1.6228
10 E I -1.9564
11 A I -1.8841
12 E I -2.1383
13 A I -1.4863
14 K I -2.1395
15 A I -1.9902
16 K I -2.3727
1 A J -1.3921
2 E J -2.6503
3 A J -1.3875
4 E J -2.0372
5 A J -1.6763
6 K J -1.6439
7 A J -1.4185
8 K J -1.9046
9 A J 0.0000
10 E J -1.4650
11 A J -1.8787
12 E J -2.0191
13 A J -2.2713
14 K J -3.4771
15 A J -2.8304
16 K J -3.2745
1 A K -1.5319
2 E K -2.7740
3 A K -2.2000
4 E K -2.9867
5 A K -2.5281
6 K K -2.7185
7 A K -2.2523
8 K K -2.7180
9 A K -2.1445
10 E K -2.6954
11 A K -2.3975
12 E K -2.2754
13 A K 0.0000
14 K K -3.3851
15 A K -2.5102
16 K K -2.7678
1 A L -1.4006
2 E L -2.2582
3 A L -1.6727
4 E L -1.9100
5 A L -1.8918
6 K L -2.1197
7 A L -1.4829
8 K L -1.5233
9 A L -1.1720
10 E L -1.3290
11 A L -1.3424
12 E L -1.6617
13 A L -1.6078
14 K L -1.7917
15 A L -2.0936
16 K L -2.4697
1 A M -1.5014
2 E M -2.6476
3 A M -2.4459
4 E M -2.8012
5 A M -2.2804
6 K M -2.0980
7 A M -1.9487
8 K M -2.1914
9 A M 0.0000
10 E M -1.4986
11 A M -1.6078
12 E M 0.0000
13 A M 0.0000
14 K M -1.8122
15 A M -1.8608
16 K M -2.6525
1 A N -1.4320
2 E N -2.3100
3 A N -1.9143
4 E N -1.9484
5 A N -2.1164
6 K N -2.4228
7 A N -1.6741
8 K N -1.6021
9 A N -1.3137
10 E N -1.4764
11 A N 0.0000
12 E N -1.7789
13 A N -1.2353
14 K N 0.0000
15 A N -2.0995
16 K N -2.2586
1 A O -1.4962
2 E O -2.6793
3 A O -2.1011
4 E O -2.9300
5 A O -2.5426
6 K O -2.3134
7 A O -2.3651
8 K O -3.0389
9 A O -2.2452
10 E O -2.0994
11 A O -2.3658
12 E O -3.0960
13 A O 0.0000
14 K O -2.2466
15 A O -2.2347
16 K O -2.8193
1 A P -1.6821
2 E P -2.9877
3 A P -2.5373
4 E P -3.3701
5 A P -2.9386
6 K P -3.5909
7 A P -3.0124
8 K P -3.5139
9 A P -2.5128
10 E P -2.4946
11 A P -2.8159
12 E P -2.9979
13 A P -1.9999
14 K P -2.5254
15 A P -2.0885
16 K P -2.3023
1 A Q -1.5013
2 E Q -2.7308
3 A Q -2.4273
4 E Q -2.9171
5 A Q -2.4875
6 K Q -2.5210
7 A Q -2.5869
8 K Q -3.0775
9 A Q -2.4746
10 E Q -2.1745
11 A Q -2.1845
12 E Q -2.9896
13 A Q 0.0000
14 K Q -2.1766
15 A Q -2.1423
16 K Q -2.5427
1 A R -1.5039
2 E R -2.4417
3 A R -1.9984
4 E R -2.2689
5 A R -2.3741
6 K R -3.1374
7 A R -2.5169
8 K R -2.9914
9 A R -2.3931
10 E R -2.8660
11 A R 0.0000
12 E R -3.3372
13 A R -2.0285
14 K R 0.0000
15 A R -2.4887
16 K R -2.4882
1 A S -1.7120
2 E S -2.6543
3 A S -2.0742
4 E S -2.7323
5 A S -2.2929
6 K S -2.2749
7 A S -1.8009
8 K S -1.9086
9 A S 0.0000
10 E S -1.8589
11 A S -1.6237
12 E S 0.0000
13 A S 0.0000
14 K S -2.1569
15 A S -1.7250
16 K S -2.4316
1 A T -1.4230
2 E T -2.3939
3 A T -1.6557
4 E T -2.0230
5 A T -2.4633
6 K T -2.9321
7 A T -2.3062
8 K T -2.5100
9 A T -2.3206
10 E T -2.9651
11 A T 0.0000
12 E T -2.7651
13 A T -2.1528
14 K T -3.0007
15 A T -2.7591
16 K T -2.5723
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Laboratory of Theory of Biopolymers 2018