Project name: clone131

Status: done

Started: 2026-07-28 07:03:00
Settings
Chain sequence(s) H: QVQLEQSGAEIKKPGSSVTVSCTGSGGIFSSHIVSWVRQAPGQGLEWVGGIVPLFDTTNYAEKFQGRVTITVDESRATTYMELSSLESEDTAIYYCTRGRAPGDIGKTGGIFDHWGQGTLVTVSS
L: DIQMTQSPTSLSASVGDRVTITCRATQGISNYLAWFQQKPGKAPKSLIYEASSLQSGVPSRFSGSGSGSGTDFTLTISSLQPEDFAIYYCQQYNSYPWTFGQGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:14)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:15)
Show buried residues

Minimal score value
-3.182
Maximal score value
1.8209
Average score
-0.5229
Total score value
-122.3513

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.6406
2 V H 0.0000
3 Q H -2.4458
4 L H 0.0000
5 E H -2.5524
6 Q H 0.0000
7 S H -0.8576
8 G H -0.9032
9 A H 0.1791
11 E H 0.2919
12 I H 1.2418
13 K H -0.6972
14 K H -2.0600
15 P H -2.0109
16 G H -1.5640
17 S H -1.2915
18 S H -0.8175
19 V H 0.0000
20 T H -0.2779
21 V H 0.0000
22 S H -0.2990
23 C H 0.0000
24 T H -1.4458
25 G H -1.1896
26 S H -1.0886
27 G H -1.1131
28 G H -0.2537
29 I H 1.6177
30 F H 0.6780
35 S H 0.6010
36 S H 0.8134
37 H H 0.0000
38 I H 0.0000
39 V H 0.0000
40 S H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.5021
45 A H -0.9292
46 P H -0.9893
47 G H -1.2136
48 Q H -1.8086
49 G H -1.2289
50 L H 0.0000
51 E H -0.9834
52 W H 0.0000
53 V H 0.0000
54 G H 0.0000
55 G H 0.0000
56 I H 0.0000
57 V H 0.5771
58 P H 0.3311
59 L H 1.7039
62 F H 1.8209
63 D H -0.4902
64 T H 0.0159
65 T H -0.2221
66 N H -0.4109
67 Y H -0.8052
68 A H 0.0000
69 E H -3.1820
70 K H -3.0209
71 F H 0.0000
72 Q H -2.5972
74 G H -1.6704
75 R H -1.2328
76 V H 0.0000
77 T H -0.4681
78 I H 0.0000
79 T H -0.3653
80 V H -1.1172
81 D H -2.3466
82 E H -2.7052
83 S H -2.1909
84 R H -2.7988
85 A H -1.6689
86 T H 0.0000
87 T H 0.0000
88 Y H 0.1175
89 M H 0.0000
90 E H -0.4092
91 L H 0.0000
92 S H -0.7923
93 S H -1.1850
94 L H 0.0000
95 E H -2.6955
96 S H -2.2109
97 E H -2.4444
98 D H 0.0000
99 T H -0.6394
100 A H 0.0000
101 I H 0.3797
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 T H 0.0000
106 R H -0.5249
107 G H 0.0000
108 R H -0.6779
109 A H -0.3218
110 P H -0.2028
111 G H -0.4184
111A D H -0.3654
111B I H 1.2033
112C G H -0.0373
112B K H -0.4725
112A T H -0.4016
112 G H 0.0000
113 G H 0.0000
114 I H 0.0000
115 F H 0.0000
116 D H -0.6246
117 H H -1.0689
118 W H -1.1677
119 G H 0.0000
120 Q H -2.1755
121 G H -1.0414
122 T H 0.0000
123 L H 0.6427
124 V H 0.0000
125 T H -0.0043
126 V H 0.0000
127 S H -0.7946
128 S H -0.7361
1 D L -2.2655
2 I L 0.0000
3 Q L -2.1790
4 M L 0.0000
5 T L -1.3021
6 Q L 0.0000
7 S L -0.7122
8 P L -0.5119
9 T L -0.5965
10 S L -0.7373
11 L L -0.4263
12 S L -0.5350
13 A L 0.0000
14 S L -0.0772
15 V L 0.6405
16 G L -0.4610
17 D L -1.3952
18 R L -2.1111
19 V L 0.0000
20 T L -0.5887
21 I L 0.0000
22 T L -0.7416
23 C L 0.0000
24 R L -2.3852
25 A L 0.0000
26 T L -1.7812
27 Q L -1.9483
28 G L -1.1680
29 I L 0.0000
36 S L -0.8049
37 N L -0.6047
38 Y L -0.2006
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 F L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.5082
46 P L -1.1270
47 G L -1.5951
48 K L -2.4377
49 A L -1.5041
50 P L 0.0000
51 K L -1.1885
52 S L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.1799
56 E L -0.2457
57 A L 0.0000
65 S L -0.3142
66 S L 0.0256
67 L L 0.3140
68 Q L -0.1903
69 S L -0.3676
70 G L -0.5634
71 V L -0.2794
72 P L -0.3558
74 S L -0.4182
75 R L -0.8503
76 F L 0.0000
77 S L -0.3330
78 G L -0.2531
79 S L -0.6450
80 G L -0.8454
81 S L -0.8761
82 G L -0.9039
83 S L -1.0861
84 G L -1.3962
85 T L -1.7679
86 D L -1.7164
87 F L 0.0000
88 T L -0.6337
89 L L 0.0000
90 T L 0.0000
91 I L 0.0000
92 S L -1.3720
93 S L -1.0321
94 L L 0.0000
95 Q L -0.4991
96 P L -0.6363
97 E L -1.6370
98 D L 0.0000
99 F L -0.2898
100 A L 0.0000
101 I L -0.3965
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 Y L 0.0000
108 N L -0.4246
109 S L -0.1568
114 Y L 0.1873
115 P L 0.0000
116 W L 0.0000
117 T L -0.7240
118 F L 0.0000
119 G L 0.0000
120 Q L -1.3465
121 G L 0.0000
122 T L 0.0000
123 K L -1.3480
124 V L 0.0000
125 E L -0.4129
126 I L 0.9480
127 K L -0.7816
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Laboratory of Theory of Biopolymers 2018