Project name: 4b54975718b9178

Status: done

Started: 2026-05-21 11:31:37
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Chain sequence(s) A: SKGHKGH
C: SKGHKGH
B: SKGHKGH
E: SKGHKGH
D: SKGHKGH
G: SKGHKGH
F: SKGHKGH
I: SKGHKGH
H: SKGHKGH
K: SKGHKGH
J: SKGHKGH
M: SKGHKGH
L: SKGHKGH
O: SKGHKGH
N: SKGHKGH
Q: SKGHKGH
P: SKGHKGH
S: SKGHKGH
R: SKGHKGH
T: SKGHKGH
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:08:11)
[INFO]       Main:     Simulation completed successfully.                                          (00:08:15)
Show buried residues

Minimal score value
-3.7162
Maximal score value
0.0
Average score
-1.9725
Total score value
-276.1495

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S A -2.3722
2 K A -3.6787
3 G A -2.3953
4 H A 0.0000
5 K A -1.8307
6 G A 0.0000
7 H A -1.6733
1 S B -2.4710
2 K B -3.7162
3 G B -2.4698
4 H B 0.0000
5 K B -1.7854
6 G B 0.0000
7 H B -1.8280
1 S C -2.3570
2 K C -3.5794
3 G C -2.4191
4 H C 0.0000
5 K C -1.7783
6 G C 0.0000
7 H C -1.7110
1 S D -2.2921
2 K D -3.3631
3 G D -2.1871
4 H D 0.0000
5 K D -1.8100
6 G D 0.0000
7 H D -1.8075
1 S E -2.2834
2 K E -3.4822
3 G E -2.1235
4 H E 0.0000
5 K E -1.9988
6 G E 0.0000
7 H E -1.8973
1 S F -2.2909
2 K F -3.4365
3 G F -2.2992
4 H F 0.0000
5 K F -2.0964
6 G F 0.0000
7 H F -2.3295
1 S G -2.5281
2 K G -3.6377
3 G G -2.8611
4 H G -3.0497
5 K G -2.9899
6 G G -2.4380
7 H G -2.4064
1 S H -2.0754
2 K H -3.2886
3 G H -2.6943
4 H H -3.1126
5 K H -3.3596
6 G H -2.2827
7 H H -2.1480
1 S I -2.2838
2 K I -3.1388
3 G I -2.1723
4 H I -2.4453
5 K I -2.6902
6 G I 0.0000
7 H I -2.1411
1 S J -2.3635
2 K J -3.3371
3 G J -2.4956
4 H J 0.0000
5 K J -2.4179
6 G J 0.0000
7 H J -2.0541
1 S K -2.4733
2 K K -3.5770
3 G K -2.2494
4 H K 0.0000
5 K K -2.1081
6 G K 0.0000
7 H K -1.8976
1 S L -2.5251
2 K L -3.6197
3 G L -2.3267
4 H L 0.0000
5 K L -1.8822
6 G L 0.0000
7 H L -1.9436
1 S M -2.3562
2 K M -3.6367
3 G M -2.2896
4 H M 0.0000
5 K M -2.0515
6 G M 0.0000
7 H M -1.8352
1 S N -2.2258
2 K N -3.3550
3 G N -2.2398
4 H N 0.0000
5 K N -1.9589
6 G N 0.0000
7 H N -1.7734
1 S O -2.4449
2 K O -3.6700
3 G O -2.5416
4 H O 0.0000
5 K O -2.2930
6 G O 0.0000
7 H O -2.0402
1 S P -2.2181
2 K P -3.1343
3 G P -1.9677
4 H P 0.0000
5 K P -1.7312
6 G P 0.0000
7 H P -1.6447
1 S Q -2.4864
2 K Q -3.2248
3 G Q -2.6039
4 H Q -2.6889
5 K Q -2.8353
6 G Q -2.3081
7 H Q -2.1614
1 S R -2.2004
2 K R -3.0889
3 G R -2.0622
4 H R 0.0000
5 K R -1.7288
6 G R 0.0000
7 H R -2.0174
1 S S -2.5433
2 K S -3.5840
3 G S -2.7786
4 H S 0.0000
5 K S -2.7859
6 G S -2.6208
7 H S -2.3307
1 S T -2.2468
2 K T -3.3251
3 G T -2.9383
4 H T -3.3389
5 K T -3.4504
6 G T -2.5967
7 H T -2.0183
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Laboratory of Theory of Biopolymers 2018