Project name: query_structure

Status: done

Started: 2026-03-17 01:09:02
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Chain sequence(s) A: VSDVPRDLEVVAATPTSLLISWDANYYYSYGDVIYYRITYGETGGNSPVQEFTVPYYYSTATISGLKPGVDYTITVYAYDEYYTYGWSSPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:46)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:47)
Show buried residues

Minimal score value
-3.5126
Maximal score value
2.5945
Average score
-0.1784
Total score value
-17.3059

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.6125
2 S A 0.0087
3 D A -0.4836
4 V A -0.9672
5 P A 0.0000
6 R A -3.5126
7 D A -3.4510
8 L A 0.0000
9 E A -2.1273
10 V A 0.0808
11 V A 1.5331
12 A A 0.8918
13 A A 0.2902
14 T A -0.3503
15 P A -1.1359
16 T A -0.9994
17 S A -0.5353
18 L A 0.0000
19 L A 0.7344
20 I A 0.0000
21 S A -0.7159
22 W A 0.0000
23 D A -2.3637
24 A A -0.2914
25 N A 0.1917
26 Y A 1.8276
27 Y A 2.1619
28 Y A 1.3968
29 S A 1.0357
30 Y A 1.3940
31 G A 0.5188
32 D A 0.5569
33 V A 0.9388
34 I A 0.9424
35 Y A 1.1211
36 Y A 0.0000
37 R A -0.2812
38 I A 0.0000
39 T A -0.5284
40 Y A -0.2942
41 G A 0.0000
42 E A -1.5947
43 T A -1.2780
44 G A -1.2468
45 G A -1.4063
46 N A -1.5405
47 S A -0.8477
48 P A -0.3270
49 V A 0.4215
50 Q A -0.8763
51 E A -1.6246
52 F A -0.6461
53 T A 0.0744
54 V A 0.0000
55 P A 1.3009
56 Y A 2.2313
57 Y A 2.5945
58 Y A 2.0127
59 S A 0.6935
60 T A 0.4146
61 A A 0.0000
62 T A 0.2891
63 I A 0.0000
64 S A -0.6573
65 G A -1.0301
66 L A 0.0000
67 K A -2.3852
68 P A -1.6729
69 G A -1.4623
70 V A -1.4404
71 D A -2.1364
72 Y A 0.0000
73 T A -0.8095
74 I A 0.0000
75 T A -0.1758
76 V A 0.0000
77 Y A 0.2529
78 A A 0.0000
79 Y A 0.5164
80 D A 0.1930
81 E A -0.6817
82 Y A 1.1638
83 Y A 1.5228
84 T A 0.9411
85 Y A 1.4645
86 G A 0.5360
87 W A 0.3949
88 S A 0.2035
89 S A -0.2685
90 P A -0.2955
91 I A -0.4190
92 S A -0.7646
93 I A -0.7506
94 N A -1.7637
95 Y A -1.5202
96 R A -2.5702
97 T A -1.5352
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Laboratory of Theory of Biopolymers 2018