| Chain sequence(s) |
C: DARRKAEMLQNEAKTLLAQANSKLQLLKDLERKYEDNQRYLEDKAQELARLEGEVRSLLKDISQKVAVYSTCL
B: ENVERWQGQYEGLRGQDLGQAVLDAGHSVSTLEKTLPQLSAKLSILENRGVHNASLALSASIGRVRELCAQARGAASKVKV D: DTVDLNKLNEIEGTLNKAKDEMKVSDLDRKVSDLENEAKKQEAAIMDYNRDIEEIMKCIRNLEDIRKTLPSGCFNTPSIEKP input PDB |
| Selected Chain(s) | B,C,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | SL40B,LS39B |
| Energy difference between WT (input) and mutated protein (by FoldX) | 2.84969 kcal/mol
CAUTION: Your mutation/s can destabilize the protein structure |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:02)
[INFO] FoldX: Building mutant model (00:03:32)
[INFO] FoldX: Starting FoldX energy minimalization (00:04:14)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:07:55)
[INFO] Main: Simulation completed successfully. (00:07:57)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | B | -2.8729 | |
| 2 | N | B | -2.3170 | |
| 3 | V | B | -0.8212 | |
| 4 | E | B | -2.9636 | |
| 5 | R | B | -3.2710 | |
| 6 | W | B | -1.2774 | |
| 7 | Q | B | -1.8822 | |
| 8 | G | B | -2.4984 | |
| 9 | Q | B | -2.0995 | |
| 10 | Y | B | -1.6927 | |
| 11 | E | B | -2.8779 | |
| 12 | G | B | -2.0283 | |
| 13 | L | B | -1.1667 | |
| 14 | R | B | -2.9622 | |
| 15 | G | B | -2.9567 | |
| 16 | Q | B | -2.5063 | |
| 17 | D | B | -2.5452 | |
| 18 | L | B | -2.5111 | |
| 19 | G | B | -1.6143 | |
| 20 | Q | B | -1.5491 | |
| 21 | A | B | 0.0000 | |
| 22 | V | B | 0.0000 | |
| 23 | L | B | 0.0487 | |
| 24 | D | B | -1.0077 | |
| 25 | A | B | 0.0000 | |
| 26 | G | B | -1.0362 | |
| 27 | H | B | -1.2929 | |
| 28 | S | B | -1.3792 | |
| 29 | V | B | 0.0000 | |
| 30 | S | B | -1.5296 | |
| 31 | T | B | -1.7195 | |
| 32 | L | B | 0.0000 | |
| 33 | E | B | -3.1287 | |
| 34 | K | B | -2.8540 | |
| 35 | T | B | -1.8480 | |
| 36 | L | B | 0.0000 | |
| 37 | P | B | -1.5826 | |
| 38 | Q | B | -1.5299 | |
| 39 | S | B | 0.0000 | mutated: LS39B |
| 40 | L | B | -0.1294 | mutated: SL40B |
| 41 | A | B | -0.0147 | |
| 42 | K | B | -0.3675 | |
| 43 | L | B | 0.0000 | |
| 44 | S | B | -0.3317 | |
| 45 | I | B | 0.6123 | |
| 46 | L | B | 0.0000 | |
| 47 | E | B | -2.0180 | |
| 48 | N | B | -1.5229 | |
| 49 | R | B | -0.9029 | |
| 50 | G | B | -0.4787 | |
| 51 | V | B | 0.8582 | |
| 52 | H | B | 0.0587 | |
| 53 | N | B | -0.5641 | |
| 54 | A | B | 0.0000 | |
| 55 | S | B | 0.4189 | |
| 56 | L | B | 1.2990 | |
| 57 | A | B | 0.3360 | |
| 58 | L | B | 0.0000 | |
| 59 | S | B | -0.0531 | |
| 60 | A | B | -0.0386 | |
| 61 | S | B | -0.6833 | |
| 62 | I | B | 0.0000 | |
| 63 | G | B | -1.8923 | |
| 64 | R | B | -2.3713 | |
| 65 | V | B | 0.0000 | |
| 66 | R | B | -2.8602 | |
| 67 | E | B | -3.2218 | |
| 68 | L | B | 0.0000 | |
| 69 | C | B | 0.0000 | |
| 70 | A | B | -1.8994 | |
| 71 | Q | B | -2.0481 | |
| 72 | A | B | 0.0000 | |
| 73 | R | B | -2.2023 | |
| 74 | G | B | -1.5653 | |
| 75 | A | B | -1.6893 | |
| 76 | A | B | 0.0000 | |
| 77 | S | B | -1.6104 | |
| 78 | K | B | -2.2208 | |
| 79 | V | B | 0.0000 | |
| 80 | K | B | -1.2967 | |
| 81 | V | B | 0.6479 | |
| 1 | D | C | -2.6152 | |
| 2 | A | C | -2.3951 | |
| 3 | R | C | -3.2262 | |
| 4 | R | C | -3.2976 | |
| 5 | K | C | -2.4882 | |
| 6 | A | C | 0.0000 | |
| 7 | E | C | -2.7951 | |
| 8 | M | C | -1.8863 | |
| 9 | L | C | 0.0000 | |
| 10 | Q | C | -2.1769 | |
| 11 | N | C | -2.3535 | |
| 12 | E | C | -2.2106 | |
| 13 | A | C | 0.0000 | |
| 14 | K | C | -2.2818 | |
| 15 | T | C | -1.5666 | |
| 16 | L | C | -1.2171 | |
| 17 | L | C | -1.5519 | |
| 18 | A | C | -1.1690 | |
| 19 | Q | C | -1.6017 | |
| 20 | A | C | 0.0000 | |
| 21 | N | C | -1.6353 | |
| 22 | S | C | -1.4844 | |
| 23 | K | C | -1.7171 | |
| 24 | L | C | -1.5483 | |
| 25 | Q | C | -2.0905 | |
| 26 | L | C | -1.3421 | |
| 27 | L | C | 0.0000 | |
| 28 | K | C | -2.3587 | |
| 29 | D | C | -2.5608 | |
| 30 | L | C | 0.0000 | |
| 31 | E | C | -2.6151 | |
| 32 | R | C | -3.8053 | |
| 33 | K | C | -3.4763 | |
| 34 | Y | C | -2.8949 | |
| 35 | E | C | -3.5642 | |
| 36 | D | C | -3.6683 | |
| 37 | N | C | 0.0000 | |
| 38 | Q | C | -2.4838 | |
| 39 | R | C | -3.1084 | |
| 40 | Y | C | -1.9276 | |
| 41 | L | C | 0.0000 | |
| 42 | E | C | -2.6695 | |
| 43 | D | C | -3.0287 | |
| 44 | K | C | -2.3132 | |
| 45 | A | C | -1.8714 | |
| 46 | Q | C | -2.7642 | |
| 47 | E | C | -2.5641 | |
| 48 | L | C | 0.0000 | |
| 49 | A | C | -1.9495 | |
| 50 | R | C | -2.7423 | |
| 51 | L | C | -1.7698 | |
| 52 | E | C | 0.0000 | |
| 53 | G | C | -2.0419 | |
| 54 | E | C | -2.3992 | |
| 55 | V | C | 0.0000 | |
| 56 | R | C | -2.3842 | |
| 57 | S | C | -2.0164 | |
| 58 | L | C | 0.0000 | |
| 59 | L | C | -2.3836 | |
| 60 | K | C | -2.9945 | |
| 61 | D | C | -2.6899 | |
| 62 | I | C | 0.0000 | |
| 63 | S | C | -2.0910 | |
| 64 | Q | C | -1.9929 | |
| 65 | K | C | -1.5022 | |
| 66 | V | C | 0.0000 | |
| 67 | A | C | -0.3966 | |
| 68 | V | C | 0.9046 | |
| 69 | Y | C | 0.6723 | |
| 70 | S | C | 0.3120 | |
| 71 | T | C | 0.8508 | |
| 72 | C | C | 1.4475 | |
| 73 | L | C | 1.7673 | |
| 1 | D | D | -1.5078 | |
| 2 | T | D | -0.4539 | |
| 3 | V | D | 0.5032 | |
| 4 | D | D | -1.0002 | |
| 5 | L | D | -1.3395 | |
| 6 | N | D | -2.2157 | |
| 7 | K | D | -2.1152 | |
| 8 | L | D | 0.0000 | |
| 9 | N | D | -3.0993 | |
| 10 | E | D | -3.3593 | |
| 11 | I | D | 0.0000 | |
| 12 | E | D | -2.4824 | |
| 13 | G | D | -2.1320 | |
| 14 | T | D | -2.2281 | |
| 15 | L | D | 0.0000 | |
| 16 | N | D | -2.7008 | |
| 17 | K | D | -3.6193 | |
| 18 | A | D | 0.0000 | |
| 19 | K | D | -2.8985 | |
| 20 | D | D | -3.5636 | |
| 21 | E | D | -3.1451 | |
| 22 | M | D | 0.0000 | |
| 23 | K | D | -3.0513 | |
| 24 | V | D | -0.6523 | |
| 25 | S | D | -1.7423 | |
| 26 | D | D | -3.1464 | |
| 27 | L | D | 0.0000 | |
| 28 | D | D | -3.9926 | |
| 29 | R | D | -4.1852 | |
| 30 | K | D | -3.7410 | |
| 31 | V | D | 0.0000 | |
| 32 | S | D | -3.1474 | |
| 33 | D | D | -4.2237 | |
| 34 | L | D | 0.0000 | |
| 35 | E | D | -3.7086 | |
| 36 | N | D | -3.9195 | |
| 37 | E | D | -3.9413 | |
| 38 | A | D | 0.0000 | |
| 39 | K | D | -4.1064 | |
| 40 | K | D | -3.6844 | |
| 41 | Q | D | -2.7911 | |
| 42 | E | D | -2.4684 | |
| 43 | A | D | -1.8360 | |
| 44 | A | D | -1.6407 | |
| 45 | I | D | 0.0000 | |
| 46 | M | D | -1.2324 | |
| 47 | D | D | -2.6190 | |
| 48 | Y | D | -2.0289 | |
| 49 | N | D | -2.3952 | |
| 50 | R | D | -3.6589 | |
| 51 | D | D | -3.2665 | |
| 52 | I | D | 0.0000 | |
| 53 | E | D | -3.8132 | |
| 54 | E | D | -3.6253 | |
| 55 | I | D | 0.0000 | |
| 56 | M | D | -2.1498 | |
| 57 | K | D | -2.9287 | |
| 58 | C | D | -2.3640 | |
| 59 | I | D | 0.0000 | |
| 60 | R | D | -2.8250 | |
| 61 | N | D | -2.6298 | |
| 62 | L | D | 0.0000 | |
| 63 | E | D | -2.8362 | |
| 64 | D | D | -3.2086 | |
| 65 | I | D | -2.0116 | |
| 66 | R | D | -2.6204 | |
| 67 | K | D | -2.7098 | |
| 68 | T | D | -1.2434 | |
| 69 | L | D | 0.0000 | |
| 70 | P | D | 0.0532 | |
| 71 | S | D | -0.1982 | |
| 72 | G | D | 0.3153 | |
| 73 | C | D | 1.4347 | |
| 74 | F | D | 1.7618 | |
| 75 | N | D | 0.1275 | |
| 76 | T | D | 0.3351 | |
| 77 | P | D | 0.1095 | |
| 78 | S | D | -0.3981 | |
| 79 | I | D | 0.3595 | |
| 80 | E | D | -1.8240 | |
| 81 | K | D | -2.1228 | |
| 82 | P | D | -1.3013 |