Project name: 4bd04d63f1d8c6f

Status: done

Started: 2025-02-07 06:02:58
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Chain sequence(s) A: LVFAALKA
C: LVFAALKA
B: LVFAALKA
E: LVFAALKA
D: LVFAALKA
G: LVFAALKA
F: LVFAALKA
H: LVFAALKA
input PDB
Selected Chain(s) A,C,B,E,D,G,F,H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:32)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:34)
Show buried residues

Minimal score value
-1.0238
Maximal score value
3.4543
Average score
0.9847
Total score value
63.0195

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 0.4860
2 V A 1.3652
4 F A 1.7257
5 A A 0.7536
6 A A 0.3413
8 L A 1.0890
9 K A -0.7308
10 A A 0.2038
1 L B 0.3128
2 V B 1.5098
4 F B 2.1178
5 A B 0.7452
6 A B 0.2941
8 L B 0.8974
9 K B -1.0238
10 A B 0.1038
1 L C 0.5752
2 V C 1.6836
4 F C 2.1948
5 A C 0.7536
6 A C 0.5445
8 L C 1.1244
9 K C -0.6333
10 A C 0.2137
1 L D 0.0000
2 V D 1.7329
4 F D 2.4083
5 A D 0.5479
6 A D 0.3374
8 L D 1.3163
9 K D -0.7781
10 A D 0.1230
1 L E 2.2183
2 V E 2.4686
4 F E 2.4728
5 A E 1.2566
6 A E 0.3491
8 L E 1.5240
9 K E -0.3583
10 A E 0.9920
1 L F 1.2126
2 V F 2.1674
4 F F 3.2983
5 A F 0.0000
6 A F 0.9984
8 L F 1.7387
9 K F -0.4797
10 A F 0.3478
1 L G 1.1443
2 V G 2.2062
4 F G 3.4543
5 A G 0.0000
6 A G 1.1259
8 L G 1.7229
9 K G -0.4136
10 A G 0.2947
1 L H 1.8491
2 V H 2.3731
4 F H 3.0713
5 A H 1.4778
6 A H 0.4649
8 L H 1.5495
9 K H -0.4886
10 A H 0.6460
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Laboratory of Theory of Biopolymers 2018