Chain sequence(s) |
A: LVFAALKA
C: LVFAALKA B: LVFAALKA E: LVFAALKA D: LVFAALKA G: LVFAALKA F: LVFAALKA H: LVFAALKA input PDB |
Selected Chain(s) | A,C,B,E,D,G,F,H |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
Dynamic mode | No |
Automated mutations | No |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] FoldX: Starting FoldX energy minimalization (00:00:00) [INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:32) [INFO] Main: Simulation completed successfully. (00:00:34) |
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan3D score | mutation |
---|---|---|---|---|
residue index | residue name | chain | Aggrescan3D score | |
1 | L | A | 0.4860 | |
2 | V | A | 1.3652 | |
4 | F | A | 1.7257 | |
5 | A | A | 0.7536 | |
6 | A | A | 0.3413 | |
8 | L | A | 1.0890 | |
9 | K | A | -0.7308 | |
10 | A | A | 0.2038 | |
1 | L | B | 0.3128 | |
2 | V | B | 1.5098 | |
4 | F | B | 2.1178 | |
5 | A | B | 0.7452 | |
6 | A | B | 0.2941 | |
8 | L | B | 0.8974 | |
9 | K | B | -1.0238 | |
10 | A | B | 0.1038 | |
1 | L | C | 0.5752 | |
2 | V | C | 1.6836 | |
4 | F | C | 2.1948 | |
5 | A | C | 0.7536 | |
6 | A | C | 0.5445 | |
8 | L | C | 1.1244 | |
9 | K | C | -0.6333 | |
10 | A | C | 0.2137 | |
1 | L | D | 0.0000 | |
2 | V | D | 1.7329 | |
4 | F | D | 2.4083 | |
5 | A | D | 0.5479 | |
6 | A | D | 0.3374 | |
8 | L | D | 1.3163 | |
9 | K | D | -0.7781 | |
10 | A | D | 0.1230 | |
1 | L | E | 2.2183 | |
2 | V | E | 2.4686 | |
4 | F | E | 2.4728 | |
5 | A | E | 1.2566 | |
6 | A | E | 0.3491 | |
8 | L | E | 1.5240 | |
9 | K | E | -0.3583 | |
10 | A | E | 0.9920 | |
1 | L | F | 1.2126 | |
2 | V | F | 2.1674 | |
4 | F | F | 3.2983 | |
5 | A | F | 0.0000 | |
6 | A | F | 0.9984 | |
8 | L | F | 1.7387 | |
9 | K | F | -0.4797 | |
10 | A | F | 0.3478 | |
1 | L | G | 1.1443 | |
2 | V | G | 2.2062 | |
4 | F | G | 3.4543 | |
5 | A | G | 0.0000 | |
6 | A | G | 1.1259 | |
8 | L | G | 1.7229 | |
9 | K | G | -0.4136 | |
10 | A | G | 0.2947 | |
1 | L | H | 1.8491 | |
2 | V | H | 2.3731 | |
4 | F | H | 3.0713 | |
5 | A | H | 1.4778 | |
6 | A | H | 0.4649 | |
8 | L | H | 1.5495 | |
9 | K | H | -0.4886 | |
10 | A | H | 0.6460 |