| Chain sequence(s) |
H: EVQLVESGGGVVQPGGSLKLSCVASGTDFSINFIRWYRQAPGKQREFVAGFTATGNTNYADSMKGRFTISRDNTKNAVYLQIDSLKPEDTAVYYCYMLDKWGQGTQVTVSS
input PDB |
| Selected Chain(s) | H |
| Distance of aggregation | 5 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | VR11H,VR23H,VR5H,FE47H,IR31H,WR101H |
| Energy difference between WT (input) and mutated protein (by FoldX) | -3.0832 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with H chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:02)
[INFO] FoldX: Building mutant model (00:01:15)
[INFO] FoldX: Starting FoldX energy minimalization (00:03:58)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:05:17)
[INFO] Main: Simulation completed successfully. (00:05:19)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | H | -1.6696 | |
| 2 | V | H | 0.2044 | |
| 3 | Q | H | -1.0248 | |
| 4 | L | H | -0.3011 | |
| 5 | R | H | -1.3480 | mutated: VR5H |
| 6 | E | H | 0.0000 | |
| 7 | S | H | -0.1968 | |
| 8 | G | H | -0.4177 | |
| 9 | G | H | -0.2855 | |
| 10 | G | H | -0.5313 | |
| 11 | R | H | -1.8366 | mutated: VR11H |
| 12 | V | H | -0.3383 | |
| 13 | Q | H | -1.1736 | |
| 14 | P | H | -0.3881 | |
| 15 | G | H | -0.5036 | |
| 16 | G | H | -0.2061 | |
| 17 | S | H | -0.3660 | |
| 18 | L | H | -0.1745 | |
| 19 | K | H | -1.7101 | |
| 20 | L | H | 0.0000 | |
| 21 | S | H | -0.0305 | |
| 22 | C | H | 0.0000 | |
| 23 | R | H | -1.8430 | mutated: VR23H |
| 24 | A | H | -0.3337 | |
| 25 | S | H | -0.1687 | |
| 26 | G | H | -0.4954 | |
| 27 | T | H | -0.5410 | |
| 28 | D | H | -1.7218 | |
| 29 | F | H | 0.0834 | |
| 30 | S | H | -0.4195 | |
| 31 | R | H | -2.1559 | mutated: IR31H |
| 32 | N | H | -1.5217 | |
| 33 | F | H | 0.6521 | |
| 34 | I | H | 0.0000 | |
| 35 | R | H | -0.2615 | |
| 36 | W | H | 0.0000 | |
| 37 | Y | H | 0.0000 | |
| 38 | R | H | -0.4427 | |
| 39 | Q | H | -0.5328 | |
| 40 | A | H | -0.1219 | |
| 41 | P | H | -0.3422 | |
| 42 | G | H | -0.8270 | |
| 43 | K | H | -2.0022 | |
| 44 | Q | H | -1.6142 | |
| 45 | R | H | -1.2271 | |
| 46 | E | H | -2.1620 | |
| 47 | E | H | -1.4343 | mutated: FE47H |
| 48 | V | H | 0.0000 | |
| 49 | A | H | 0.0000 | |
| 50 | G | H | 0.0000 | |
| 51 | F | H | 0.4122 | |
| 52 | T | H | 0.1992 | |
| 53 | A | H | 0.0435 | |
| 54 | T | H | -0.1132 | |
| 55 | G | H | -0.4970 | |
| 56 | N | H | -1.3226 | |
| 57 | T | H | -0.4809 | |
| 58 | N | H | -1.2188 | |
| 59 | Y | H | 0.0517 | |
| 60 | A | H | -0.2513 | |
| 61 | D | H | -1.8261 | |
| 62 | S | H | -0.5435 | |
| 63 | M | H | 0.0000 | |
| 64 | K | H | -1.7836 | |
| 65 | G | H | -1.1042 | |
| 66 | R | H | -2.0882 | |
| 67 | F | H | 0.0000 | |
| 68 | T | H | -0.0946 | |
| 69 | I | H | 0.0000 | |
| 70 | S | H | -0.2306 | |
| 71 | R | H | -0.6659 | |
| 72 | D | H | -0.8759 | |
| 73 | N | H | -1.3889 | |
| 74 | T | H | -0.6498 | |
| 75 | K | H | -1.7768 | |
| 76 | N | H | -0.6549 | |
| 77 | A | H | 0.0000 | |
| 78 | V | H | 0.0000 | |
| 79 | Y | H | 0.2517 | |
| 80 | L | H | 0.0000 | |
| 81 | Q | H | -0.5639 | |
| 82 | I | H | 0.0000 | |
| 83 | D | H | -1.7234 | |
| 84 | S | H | -0.3769 | |
| 85 | L | H | 0.0000 | |
| 86 | K | H | -1.4552 | |
| 87 | P | H | -0.8580 | |
| 88 | E | H | -1.9013 | |
| 89 | D | H | -0.5159 | |
| 90 | T | H | -0.0578 | |
| 91 | A | H | 0.0000 | |
| 92 | V | H | 0.1874 | |
| 93 | Y | H | 0.0000 | |
| 94 | Y | H | 0.1796 | |
| 95 | C | H | 0.0000 | |
| 96 | Y | H | 0.1524 | |
| 97 | M | H | 0.4428 | |
| 98 | L | H | 0.5839 | |
| 99 | D | H | -1.9772 | |
| 100 | K | H | -2.3499 | |
| 101 | R | H | -2.0554 | mutated: WR101H |
| 102 | G | H | 0.0000 | |
| 103 | Q | H | -1.2107 | |
| 104 | G | H | -0.2737 | |
| 105 | T | H | -0.2392 | |
| 106 | Q | H | -1.1607 | |
| 107 | V | H | 0.0000 | |
| 108 | T | H | -0.2300 | |
| 109 | V | H | 0.0000 | |
| 110 | S | H | -0.2276 | |
| 111 | S | H | -0.2512 |