| Chain sequence(s) |
A: KDYSFY
B: KDYSFY input PDB |
| Selected Chain(s) | A,B |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | YW3A,YW3B |
| Energy difference between WT (input) and mutated protein (by FoldX) | 0.168965 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] FoldX: Building mutant model (00:00:06)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:17)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:24)
[INFO] Main: Simulation completed successfully. (00:00:24)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | K | A | -1.5191 | |
| 2 | D | A | -1.2784 | |
| 3 | W | A | 1.2248 | mutated: YW3A |
| 4 | S | A | 1.1856 | |
| 5 | F | A | 1.6855 | |
| 6 | Y | A | 0.9615 | |
| 1 | K | B | -1.5327 | |
| 2 | D | B | -1.2658 | |
| 3 | W | B | 1.2380 | mutated: YW3B |
| 4 | S | B | 1.3762 | |
| 5 | F | B | 1.6507 | |
| 6 | Y | B | 0.8949 |