Project name: query_structure

Status: done

Started: 2026-03-17 00:20:18
Settings
Chain sequence(s) A: QVQLQESGGGLVQAGGSLRLSCAASGRTFSEYAMGWFRQAPGKEREFVATISWSGGSTYYTDSVKGRFTISRDNAKNTVYLQMNSLKPDDTAVYYCAAAGLGTVVSEWDYDYDYWGQGTQVTVSSGS
C: QVQLQESGGGLVQAGGSLRLSCAASGRTFSEYAMGWFRQAPGKEREFVATISWSGGSTYYTDSVKGRFTISRDNAKNTVYLQMNSLKPDDTAVYYCAAAGLGTVVSEWDYDYDYWGQGTQVTVSS
B: NLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEGSLEVLFQ
D: TNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEG
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:07:58)
[INFO]       Main:     Simulation completed successfully.                                          (00:08:05)
Show buried residues

Minimal score value
-3.6763
Maximal score value
2.7951
Average score
-0.5806
Total score value
-363.4317

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.7264
2 V A -1.3437
3 Q A -1.9290
4 L A 0.0000
5 Q A -1.7706
6 E A 0.0000
7 S A -1.1437
8 G A -1.2443
9 G A -0.8190
10 G A -0.0733
11 L A 1.0349
12 V A -0.0041
13 Q A -1.2878
14 A A -1.6268
15 G A -1.3249
16 G A -0.8861
17 S A -1.1271
18 L A -1.0446
19 R A -2.1089
20 L A 0.0000
21 S A -0.8199
22 C A 0.0000
23 A A -0.9228
24 A A -1.2208
25 S A -1.5406
26 G A -1.7755
27 R A -2.5177
28 T A -1.6596
29 F A 0.0000
30 S A -1.7260
31 E A -1.8772
32 Y A -0.5930
33 A A 0.0000
34 M A 0.0000
35 G A 0.0000
36 W A 0.0000
37 F A 0.0000
38 R A 0.0000
39 Q A -1.8948
40 A A -1.7999
41 P A -1.3734
42 G A -1.9571
43 K A -3.2833
44 E A -3.5059
45 R A -2.8086
46 E A -2.4902
47 F A 0.0000
48 V A 0.0000
49 A A 0.0000
50 T A 0.0000
51 I A 0.0000
52 S A 0.0000
52A W A -0.7380
53 S A -0.9502
54 G A -0.8286
55 G A -0.9148
56 S A 0.0000
57 T A -0.2370
58 Y A 0.0000
59 Y A -0.7646
60 T A -1.4464
61 D A -2.5760
62 S A -1.8410
63 V A 0.0000
64 K A -2.6932
65 G A -1.8063
66 R A -1.5455
67 F A 0.0000
68 T A -0.7785
69 I A 0.0000
70 S A -0.5186
71 R A -1.1226
72 D A -1.8462
73 N A -1.9905
74 A A -1.4597
75 K A -2.3780
76 N A -1.7681
77 T A 0.0000
78 V A 0.0000
79 Y A -0.5584
80 L A 0.0000
81 Q A -1.1049
82 M A 0.0000
82A N A -1.4380
82B S A -1.2560
82C L A 0.0000
83 K A -2.0779
84 P A -1.8508
85 D A -2.2203
86 D A 0.0000
87 T A -0.8223
88 A A 0.0000
89 V A -0.3638
90 Y A 0.0000
91 Y A -0.5579
92 C A 0.0000
93 A A 0.0000
94 A A 0.0000
95 A A 0.0000
96 G A -0.0746
97 L A 0.9415
98 G A 0.2924
99 T A 0.0000
100 V A 0.0000
100A V A 0.0000
100B S A 0.0000
100C E A 0.0000
100D W A 0.0000
100E D A -1.5128
100F Y A -0.8978
100G D A -0.9080
100H Y A 0.0000
101 D A -1.5223
102 Y A -0.5519
103 W A -0.6166
104 G A -1.0222
105 Q A -1.5136
106 G A -1.0216
107 T A -1.0907
108 Q A -0.9930
109 V A 0.0000
110 T A -0.3266
111 V A 0.0000
112 S A -0.9812
113 S A -1.0774
114 G A -0.8526
115 S A -0.5073
320 T D -0.2533
321 N D -0.6771
322 L D 0.3998
323 C D -0.0987
324 P D -0.6178
325 F D 0.0000
326 G D -1.4710
327 E D -2.4243
328 V D 0.0000
329 F D 0.0000
330 N D -2.2116
331 A D -1.8208
332 T D -1.2271
333 K D -1.7069
334 F D 0.0000
335 P D -0.9982
336 S D -0.4448
337 V D 0.0000
338 Y D 0.1423
339 A D -0.2317
340 W D 0.0000
341 E D -2.4669
342 R D -2.2188
343 K D -2.2615
344 K D -2.2793
345 I D 0.0000
346 S D -0.9182
347 N D -1.0744
348 C D -0.1156
349 V D 0.6803
350 A D 0.0036
351 D D -0.4764
352 Y D 0.0000
353 S D -0.3069
354 V D 0.5905
355 L D 0.0000
356 Y D -0.3444
357 N D -0.9052
358 S D -0.0801
359 T D 0.2508
360 F D 0.7184
361 F D 0.0000
362 S D 0.0000
363 T D 0.0000
364 F D 0.0000
365 K D -0.1124
366 C D 0.0000
367 Y D -0.1497
368 G D -0.6311
369 V D -0.4292
370 S D -0.6060
371 A D 0.0000
372 T D -1.4511
373 K D -2.5786
374 L D 0.0000
375 N D -2.3834
376 D D -2.2678
377 L D 0.0000
378 C D 0.7049
379 F D 1.5653
380 S D 0.2100
381 N D -0.7161
382 V D -0.5522
383 Y D -1.2172
384 A D 0.0000
385 D D 0.0000
386 S D 0.0000
387 F D 0.0000
388 V D 0.0000
389 V D 0.0000
390 K D -0.5336
391 G D 0.0000
392 D D -1.8783
393 D D 0.0000
394 V D 0.0000
395 R D -2.1695
396 Q D -1.3984
397 I D 0.0000
398 A D -0.9332
399 P D -1.3622
400 G D -1.4540
401 Q D -1.1457
402 T D -0.7072
403 G D -0.2938
404 V D -0.0941
405 I D 0.0000
406 A D 0.0000
407 D D 0.0000
408 Y D -1.1125
409 N D 0.0000
410 Y D 0.0000
411 K D -1.5248
412 L D 0.0000
413 P D -1.8658
414 D D -2.8570
415 D D -2.6492
416 F D 0.0000
417 M D -0.3087
418 G D 0.0000
419 C D 0.0000
420 V D 0.0000
421 L D 0.0000
422 A D 0.0000
423 W D 0.0000
424 N D -0.3040
425 T D 0.0000
426 R D -0.1273
427 N D -0.4741
428 I D 1.0381
429 D D 0.0000
430 A D 0.0000
431 T D 0.0498
432 S D -0.1655
433 T D -0.0897
434 G D -0.1099
435 N D -0.2156
436 Y D -0.4046
437 N D -1.3287
438 Y D 0.0000
439 K D -0.3621
440 Y D 0.3862
441 R D 0.0000
442 Y D 0.0000
443 L D -0.1410
444 R D -1.0525
445 H D -2.1772
446 G D -2.0654
447 K D -2.6804
448 L D 0.0000
449 R D -2.7862
450 P D -1.8054
451 F D -1.0120
452 E D -2.4027
453 R D -2.1675
454 D D -0.3700
455 I D 1.5175
456 S D 0.7374
457 N D 0.5742
458 V D 1.6315
459 P D 0.7666
460 F D -0.3118
461 S D 0.0000
462 P D -1.7511
463 D D -2.8718
464 G D -2.5100
465 K D -2.6737
466 P D -1.1333
467 C D -0.4213
468 T D 0.2144
469 P D 0.0556
470 P D 0.0301
471 A D 0.3822
472 L D 0.9328
473 N D -0.7514
474 C D 0.0000
475 Y D 0.0000
476 W D 0.5181
477 P D 0.0000
478 L D 0.4070
479 N D -0.0503
480 D D -0.4281
481 Y D 0.0000
482 G D 0.0003
483 F D 0.0000
484 Y D 0.3114
485 T D 0.1171
486 T D 0.1034
487 T D 0.3169
488 G D 0.3329
489 I D 0.4063
490 G D 0.0454
491 Y D 0.8725
492 Q D 0.0000
493 P D 0.0000
494 Y D 0.0000
495 R D 0.0000
496 V D 0.0000
497 V D 0.0000
498 V D 0.0000
499 L D 0.0000
500 S D 0.0000
501 F D 0.0000
502 E D -1.1595
503 G D -0.7049
1 Q C -1.5016
2 V C -1.2512
3 Q C -1.8022
4 L C 0.0000
5 Q C -1.7438
6 E C 0.0000
7 S C -1.1339
8 G C -1.2847
9 G C -0.9029
10 G C 0.0294
11 L C 0.9624
12 V C 0.0000
13 Q C -1.3323
14 A C -1.4782
15 G C -1.3618
16 G C -0.8973
17 S C -1.0854
18 L C -0.9389
19 R C -2.0590
20 L C 0.0000
21 S C -0.8080
22 C C 0.0000
23 A C -1.0420
24 A C -1.0883
25 S C -1.1697
26 G C -1.1138
27 R C -1.2790
28 T C -1.0413
29 F C 0.0000
30 S C -1.6279
31 E C -1.7067
32 Y C -0.5070
33 A C 0.0000
34 M C 0.0000
35 G C 0.0000
36 W C 0.0000
37 F C 0.0000
38 R C 0.0000
39 Q C -2.2020
40 A C -2.0539
41 P C -1.4649
42 G C -2.0044
43 K C -3.3990
44 E C -3.6763
45 R C -3.1055
46 E C -2.5164
47 F C 0.0000
48 V C 0.0000
49 A C 0.0000
50 T C 0.0000
51 I C 0.0000
52 S C 0.0000
52A W C -0.6123
53 S C -0.9247
54 G C -0.7868
55 G C -0.7452
56 S C 0.0000
57 T C -0.0817
58 Y C -0.0934
59 Y C -0.8345
60 T C -1.3746
61 D C -2.4681
62 S C -1.8521
63 V C 0.0000
64 K C -2.5929
65 G C -1.7828
66 R C -1.3593
67 F C 0.0000
68 T C -0.7610
69 I C 0.0000
70 S C -0.5220
71 R C -1.2244
72 D C -2.0986
73 N C -2.1146
74 A C -1.5634
75 K C -2.4594
76 N C -1.9291
77 T C -1.4155
78 V C 0.0000
79 Y C -0.5134
80 L C 0.0000
81 Q C -1.0527
82 M C 0.0000
82A N C -1.3572
82B S C -1.2059
82C L C 0.0000
83 K C -2.2615
84 P C -1.9230
85 D C -2.2985
86 D C 0.0000
87 T C -0.9074
88 A C 0.0000
89 V C -0.4932
90 Y C 0.0000
91 Y C -0.5987
92 C C 0.0000
93 A C 0.0000
94 A C 0.0000
95 A C 0.0000
96 G C -0.0813
97 L C 0.9217
98 G C 0.2800
99 T C 0.0737
100 V C 0.0000
100A V C 0.0000
100B S C 0.0000
100C E C 0.0000
100D W C 0.0000
100E D C -1.4680
100F Y C -0.7819
100G D C -0.8278
100H Y C 0.0000
101 D C -1.4827
102 Y C -0.6730
103 W C -0.6247
104 G C -0.9694
105 Q C -1.4603
106 G C -1.0143
107 T C 0.0000
108 Q C -1.0262
109 V C 0.0000
110 T C -0.3721
111 V C 0.0000
112 S C -0.8510
113 S C -0.7984
321 N B -0.4721
322 L B 0.7823
323 C B 0.0000
324 P B -0.5107
325 F B 0.0000
326 G B -1.4301
327 E B -2.5473
328 V B 0.0000
329 F B 0.0000
330 N B -2.1899
331 A B -1.8232
332 T B -1.2564
333 K B -1.9068
334 F B 0.0000
335 P B -0.9604
336 S B -0.4797
337 V B 0.0000
338 Y B 0.2039
339 A B -0.1851
340 W B 0.0000
341 E B -2.6534
342 R B -2.5612
343 K B -2.8724
344 K B -2.2064
345 I B 0.0000
346 S B -0.4639
347 N B -0.8100
348 C B 0.5616
349 V B 1.9446
350 A B 0.6781
351 D B -0.4756
352 Y B 0.0000
353 S B -0.1223
354 V B 1.2382
355 L B 0.0000
356 Y B -0.3632
357 N B -0.8859
358 S B 0.0045
359 T B 0.2968
360 F B 0.9165
361 F B 0.0000
362 S B 0.0000
363 T B 0.0000
364 F B 0.0000
365 K B -0.1007
366 C B 0.0000
367 Y B -0.1561
368 G B -0.6300
369 V B -0.1397
370 S B -0.4100
371 A B -0.5177
372 T B -1.4985
373 K B -2.3616
374 L B 0.0000
375 N B -1.9764
376 D B -1.9571
377 L B 0.7303
378 C B 1.9495
379 F B 2.3999
380 S B 1.1191
381 N B -0.6031
382 V B 0.0000
383 Y B -1.3742
384 A B 0.0000
385 D B 0.0000
386 S B -1.1568
387 F B 0.0000
388 V B 0.0000
389 V B 0.0000
390 K B -0.7633
391 G B 0.0000
392 D B -2.0977
393 D B -1.6830
394 V B 0.0000
395 R B -2.5738
396 Q B -1.6685
397 I B 0.0000
398 A B 0.0000
399 P B -1.5997
400 G B -1.5942
401 Q B -1.3977
402 T B -0.8547
403 G B -0.5997
404 V B -0.1173
405 I B 0.0000
406 A B 0.0000
407 D B 0.0000
408 Y B -0.9004
409 N B 0.0000
410 Y B 0.0000
411 K B -1.4555
412 L B 0.0000
413 P B -1.9614
414 D B -2.9187
415 D B -2.7066
416 F B 0.0000
417 M B -0.6383
418 G B 0.0000
419 C B 0.0000
420 V B 0.0000
421 L B 0.0000
422 A B 0.0000
423 W B 0.0000
424 N B -0.3352
425 T B 0.0000
426 R B -0.5707
427 N B -0.6951
428 I B 1.0962
429 D B 0.0000
430 A B -0.1596
431 T B -0.0899
432 S B -0.1836
433 T B -0.1210
434 G B -0.1641
435 N B -0.3493
436 Y B -0.4709
437 N B -1.3822
438 Y B 0.0000
439 K B -0.4220
440 Y B 0.3532
441 R B 0.0000
442 Y B 0.2125
443 L B -0.0318
444 R B -1.1821
445 H B -1.9843
446 G B -2.0312
447 K B -2.6712
448 L B 0.0000
449 R B -2.6234
450 P B -1.8749
451 F B -0.7878
452 E B -1.7526
453 R B -1.4930
454 D B -0.0247
455 I B 1.6680
456 S B 0.8795
457 N B 0.7733
458 V B 1.7564
459 P B 0.7302
460 F B -0.3540
461 S B 0.0000
462 P B -1.7645
463 D B -2.8319
464 G B -2.4541
465 K B -2.5358
466 P B -1.1009
467 C B -0.1485
468 T B 0.2198
469 P B 0.0151
470 P B 0.0304
471 A B 0.4566
472 L B 1.1034
473 N B -0.4877
474 C B 0.0000
475 Y B 0.0000
476 W B 0.5376
477 P B 0.0000
478 L B 0.0000
479 N B -0.2466
480 D B -0.5012
481 Y B 0.0000
482 G B -0.0982
483 F B 0.0000
484 Y B 0.1926
485 T B 0.0027
486 T B 0.0590
487 T B 0.2879
488 G B 0.3813
489 I B 0.3015
490 G B -0.0167
491 Y B 0.7342
492 Q B -0.0509
493 P B 0.0000
494 Y B 0.0000
495 R B 0.0000
496 V B 0.0000
497 V B 0.0000
498 V B 0.0000
499 L B 0.0000
500 S B 0.0000
501 F B -0.7507
502 E B -1.9936
503 G B -1.3413
504 S B -0.3278
505 L B 0.7434
506 E B 0.0394
507 V B 2.3301
508 L B 2.7951
509 F B 2.4249
510 Q B 0.4545
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Laboratory of Theory of Biopolymers 2018