| Chain sequence(s) |
A: KCYTAGCSCSWPVCYRNGLPVCGETCTLG
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:08)
[INFO] Main: Simulation completed successfully. (00:00:09)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | K | A | -0.8453 | |
| 2 | C | A | 0.2217 | |
| 3 | Y | A | 0.8221 | |
| 4 | T | A | 0.2999 | |
| 5 | A | A | -0.1108 | |
| 6 | G | A | -0.4913 | |
| 7 | C | A | -0.4324 | |
| 8 | S | A | -0.1071 | |
| 9 | C | A | 0.5529 | |
| 10 | S | A | 0.6710 | |
| 11 | W | A | 1.3713 | |
| 12 | P | A | 1.0383 | |
| 13 | V | A | 1.0906 | |
| 14 | C | A | 0.0000 | |
| 15 | Y | A | 0.4764 | |
| 16 | R | A | -0.8358 | |
| 17 | N | A | -1.4172 | |
| 18 | G | A | -0.5761 | |
| 19 | L | A | 0.7413 | |
| 20 | P | A | 0.5635 | |
| 21 | V | A | 0.4684 | |
| 22 | C | A | 0.7676 | |
| 23 | G | A | -0.1969 | |
| 24 | E | A | -0.0687 | |
| 25 | T | A | 0.4405 | |
| 26 | C | A | 0.0000 | |
| 27 | T | A | 0.4518 | |
| 28 | L | A | 1.0582 | |
| 29 | G | A | -0.1528 |