Project name: query_structure

Status: done

Started: 2026-03-16 23:49:46
Settings
Chain sequence(s) A: KCYTAGCSCSWPVCYRNGLPVCGETCTLG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:08)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:09)
Show buried residues

Minimal score value
-1.4172
Maximal score value
1.3713
Average score
0.2
Total score value
5.8011

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -0.8453
2 C A 0.2217
3 Y A 0.8221
4 T A 0.2999
5 A A -0.1108
6 G A -0.4913
7 C A -0.4324
8 S A -0.1071
9 C A 0.5529
10 S A 0.6710
11 W A 1.3713
12 P A 1.0383
13 V A 1.0906
14 C A 0.0000
15 Y A 0.4764
16 R A -0.8358
17 N A -1.4172
18 G A -0.5761
19 L A 0.7413
20 P A 0.5635
21 V A 0.4684
22 C A 0.7676
23 G A -0.1969
24 E A -0.0687
25 T A 0.4405
26 C A 0.0000
27 T A 0.4518
28 L A 1.0582
29 G A -0.1528
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Laboratory of Theory of Biopolymers 2018