Project name: query_structure

Status: done

Started: 2026-03-16 19:57:58
Settings
Chain sequence(s) A: CGPGRFQCESGQCIPATWVCDGENDCVDDSDEKSCATTAPTCPSGQFKCNSGRCVPPNWLCDGVNDCPDNSDEANCPPRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:36)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:36)
Show buried residues

Minimal score value
-3.2507
Maximal score value
0.3585
Average score
-1.118
Total score value
-89.4393

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 C A -0.2842
2 G A -0.8462
3 P A -0.9546
4 G A -1.3620
5 R A -1.6786
6 F A -0.9915
7 Q A -1.7929
8 C A 0.0000
9 E A -2.5936
10 S A -1.5025
11 G A -1.3047
12 Q A -1.0030
13 C A -0.7571
14 I A 0.0000
15 P A -0.5594
16 A A -0.6244
17 T A -0.2771
18 W A -0.4865
19 V A -1.0588
20 C A -1.5541
21 D A -2.1312
22 G A -2.2483
23 E A -3.2507
24 N A -2.9222
25 D A -1.5354
26 C A 0.0000
27 V A 0.3585
28 D A -1.4082
29 D A -2.4001
30 S A 0.0000
31 D A 0.0000
32 E A -2.5618
33 K A -2.5683
34 S A -1.3283
35 C A -0.7566
36 A A -0.4031
37 T A -0.2715
38 T A -0.0621
39 A A -0.1628
40 P A -0.7238
41 T A -0.4757
42 C A -0.8586
43 P A -0.5357
44 S A -0.5438
45 G A -0.9752
46 Q A -0.9243
47 F A -0.7057
48 K A -1.6156
49 C A 0.0000
50 N A -2.2791
51 S A -1.9457
52 G A -1.8308
53 R A -2.2791
54 C A -1.3283
55 V A 0.0000
56 P A -0.5877
57 P A -0.9642
58 N A -1.4183
59 W A -0.5709
60 L A -0.6641
61 C A -1.3527
62 D A -1.7709
63 G A -0.9406
64 V A -0.1872
65 N A -1.5491
66 D A -1.2451
67 C A 0.0000
68 P A -1.7249
69 D A -2.1284
70 N A -2.0517
71 S A -1.9059
72 D A 0.0000
73 E A -1.2670
74 A A -1.0476
75 N A -1.2966
76 C A -1.0370
77 P A -1.0426
78 P A -1.3443
79 R A -1.9992
80 T A -1.0386
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018