Project name: Afimkibart

Status: done

Started: 2026-03-23 07:16:50
Settings
Chain sequence(s) H: QVQLVQSGAEVKKPGASVKVSCKASGYDFTYYGISWVRQAPGQGLEWMGWISTYNGNTHYARMLQGRVTMTTDTSTRTAYMELRSLRSDDTAVYYCARENYYGSGAYRGGMDVWGQGTTVTVSS
L: EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWPWTFGQGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:17)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:18)
Show buried residues

Minimal score value
-2.8687
Maximal score value
1.5144
Average score
-0.4984
Total score value
-115.1241

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.2588
2 V H -0.6359
3 Q H -0.7682
4 L H 0.0000
5 V H 0.4648
6 Q H 0.0000
7 S H -0.5256
8 G H -0.6032
9 A H -0.0214
11 E H -0.1382
12 V H 0.9415
13 K H -0.8624
14 K H -2.1067
15 P H -2.2015
16 G H -1.6438
17 A H -1.3376
18 S H -1.4927
19 V H 0.0000
20 K H -1.9110
21 V H 0.0000
22 S H -0.3705
23 C H 0.0000
24 K H -0.7056
25 A H 0.0000
26 S H -0.8563
27 G H -1.0034
28 Y H -0.5873
29 D H -0.7079
30 F H 0.0000
35 T H 0.4941
36 Y H 1.5144
37 Y H 1.1325
38 G H 0.0000
39 I H 0.0000
40 S H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H -0.4246
44 Q H -0.6770
45 A H -1.0261
46 P H -1.0191
47 G H -1.2147
48 Q H -1.8875
49 G H -1.3256
50 L H 0.0000
51 E H -0.8089
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 W H 0.0000
56 I H 0.0000
57 S H 0.0000
58 T H 0.0000
59 Y H 0.7163
62 N H -1.2270
63 G H -1.3598
64 N H -1.7332
65 T H -0.9478
66 H H -0.5080
67 Y H -0.1793
68 A H 0.0000
69 R H -1.7867
70 M H -0.2197
71 L H 0.0000
72 Q H -1.6044
74 G H -1.3039
75 R H -0.9962
76 V H 0.0000
77 T H -0.4829
78 M H 0.0000
79 T H -0.2947
80 T H -0.4452
81 D H -0.7706
82 T H -0.7463
83 S H -0.5989
84 T H -0.7709
85 R H -1.3383
86 T H 0.0000
87 A H 0.0000
88 Y H -0.2489
89 M H 0.0000
90 E H -1.1269
91 L H 0.0000
92 R H -1.5827
93 S H -1.3724
94 L H 0.0000
95 R H -2.8687
96 S H -2.2566
97 D H -2.4512
98 D H 0.0000
99 T H -0.8504
100 A H 0.0000
101 V H 0.1532
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 E H 0.0000
108 N H 0.3802
109 Y H 0.6863
110 Y H 0.1208
111 G H -0.4004
111A S H -0.4498
111B G H -0.3809
112B A H 0.0766
112A Y H 0.6964
112 R H 0.0923
113 G H 0.0000
114 G H 0.0000
115 M H 0.0000
116 D H -0.2488
117 V H -0.2095
118 W H 0.0000
119 G H 0.0000
120 Q H -1.2816
121 G H -0.6543
122 T H 0.0000
123 T H 0.0196
124 V H 0.0000
125 T H -0.2790
126 V H 0.0000
127 S H -1.2066
128 S H -1.1802
1 E L -1.8842
2 I L 0.0000
3 V L 0.6433
4 L L 0.0000
5 T L -0.6798
6 Q L 0.0000
7 S L -0.7705
8 P L -0.3559
9 A L -0.4720
10 T L -0.4682
11 L L -0.1556
12 S L -0.2636
13 L L -0.4932
14 S L -0.8384
15 P L -1.1367
16 G L -1.5690
17 E L -2.0059
18 R L -2.4031
19 A L 0.0000
20 T L -0.6394
21 L L 0.0000
22 S L -0.7933
23 C L 0.0000
24 R L -2.2494
25 A L 0.0000
26 S L -0.9912
27 Q L -1.6389
28 S L -1.2147
29 V L 0.0000
36 S L -0.4179
37 S L -0.1841
38 Y L 0.3260
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.2457
46 P L -0.9951
47 G L -1.3791
48 Q L -2.0018
49 A L -1.2215
50 P L 0.0000
51 R L -0.8951
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.3948
56 D L 0.0000
57 A L 0.0000
65 S L -0.8524
66 N L -1.2537
67 R L -1.4642
68 A L 0.0000
69 T L -0.6661
70 G L -0.6662
71 I L 0.0000
72 P L -0.4258
74 A L -0.3588
75 R L -0.7400
76 F L 0.0000
77 S L -0.6973
78 G L -0.6773
79 S L -0.7104
80 G L -0.9963
83 S L -0.8737
84 G L -1.0437
85 T L -1.6647
86 D L -1.9528
87 F L 0.0000
88 T L -0.7261
89 L L 0.0000
90 T L -0.6090
91 I L 0.0000
92 S L -1.2468
93 S L -1.5584
94 L L 0.0000
95 E L -1.5515
96 P L -0.8465
97 E L -1.2988
98 D L 0.0000
99 F L -0.0836
100 A L 0.0000
101 V L -0.2799
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 R L -0.2317
108 S L -0.5001
109 N L -1.4037
114 W L -0.7829
115 P L -0.8905
116 W L 0.0000
117 T L -0.2189
118 F L 0.0475
119 G L 0.0000
120 Q L -1.2148
121 G L 0.0000
122 T L 0.0000
123 K L -1.0904
124 V L 0.0000
125 E L -0.0089
126 I L 1.0092
127 K L -0.8109
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018