| Chain sequence(s) |
H: QVQLVQSGAEVKKPGASVKVSCKASGYDFTYYGISWVRQAPGQGLEWMGWISTYNGNTHYARMLQGRVTMTTDTSTRTAYMELRSLRSDDTAVYYCARENYYGSGAYRGGMDVWGQGTTVTVSS
L: EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWPWTFGQGTKVEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:17)
[INFO] Main: Simulation completed successfully. (00:01:18)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.2588 | |
| 2 | V | H | -0.6359 | |
| 3 | Q | H | -0.7682 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.4648 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.5256 | |
| 8 | G | H | -0.6032 | |
| 9 | A | H | -0.0214 | |
| 11 | E | H | -0.1382 | |
| 12 | V | H | 0.9415 | |
| 13 | K | H | -0.8624 | |
| 14 | K | H | -2.1067 | |
| 15 | P | H | -2.2015 | |
| 16 | G | H | -1.6438 | |
| 17 | A | H | -1.3376 | |
| 18 | S | H | -1.4927 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.9110 | |
| 21 | V | H | 0.0000 | |
| 22 | S | H | -0.3705 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -0.7056 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.8563 | |
| 27 | G | H | -1.0034 | |
| 28 | Y | H | -0.5873 | |
| 29 | D | H | -0.7079 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | 0.4941 | |
| 36 | Y | H | 1.5144 | |
| 37 | Y | H | 1.1325 | |
| 38 | G | H | 0.0000 | |
| 39 | I | H | 0.0000 | |
| 40 | S | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | -0.4246 | |
| 44 | Q | H | -0.6770 | |
| 45 | A | H | -1.0261 | |
| 46 | P | H | -1.0191 | |
| 47 | G | H | -1.2147 | |
| 48 | Q | H | -1.8875 | |
| 49 | G | H | -1.3256 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.8089 | |
| 52 | W | H | 0.0000 | |
| 53 | M | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | W | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | S | H | 0.0000 | |
| 58 | T | H | 0.0000 | |
| 59 | Y | H | 0.7163 | |
| 62 | N | H | -1.2270 | |
| 63 | G | H | -1.3598 | |
| 64 | N | H | -1.7332 | |
| 65 | T | H | -0.9478 | |
| 66 | H | H | -0.5080 | |
| 67 | Y | H | -0.1793 | |
| 68 | A | H | 0.0000 | |
| 69 | R | H | -1.7867 | |
| 70 | M | H | -0.2197 | |
| 71 | L | H | 0.0000 | |
| 72 | Q | H | -1.6044 | |
| 74 | G | H | -1.3039 | |
| 75 | R | H | -0.9962 | |
| 76 | V | H | 0.0000 | |
| 77 | T | H | -0.4829 | |
| 78 | M | H | 0.0000 | |
| 79 | T | H | -0.2947 | |
| 80 | T | H | -0.4452 | |
| 81 | D | H | -0.7706 | |
| 82 | T | H | -0.7463 | |
| 83 | S | H | -0.5989 | |
| 84 | T | H | -0.7709 | |
| 85 | R | H | -1.3383 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.2489 | |
| 89 | M | H | 0.0000 | |
| 90 | E | H | -1.1269 | |
| 91 | L | H | 0.0000 | |
| 92 | R | H | -1.5827 | |
| 93 | S | H | -1.3724 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -2.8687 | |
| 96 | S | H | -2.2566 | |
| 97 | D | H | -2.4512 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.8504 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.1532 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | E | H | 0.0000 | |
| 108 | N | H | 0.3802 | |
| 109 | Y | H | 0.6863 | |
| 110 | Y | H | 0.1208 | |
| 111 | G | H | -0.4004 | |
| 111A | S | H | -0.4498 | |
| 111B | G | H | -0.3809 | |
| 112B | A | H | 0.0766 | |
| 112A | Y | H | 0.6964 | |
| 112 | R | H | 0.0923 | |
| 113 | G | H | 0.0000 | |
| 114 | G | H | 0.0000 | |
| 115 | M | H | 0.0000 | |
| 116 | D | H | -0.2488 | |
| 117 | V | H | -0.2095 | |
| 118 | W | H | 0.0000 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.2816 | |
| 121 | G | H | -0.6543 | |
| 122 | T | H | 0.0000 | |
| 123 | T | H | 0.0196 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | -0.2790 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -1.2066 | |
| 128 | S | H | -1.1802 | |
| 1 | E | L | -1.8842 | |
| 2 | I | L | 0.0000 | |
| 3 | V | L | 0.6433 | |
| 4 | L | L | 0.0000 | |
| 5 | T | L | -0.6798 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.7705 | |
| 8 | P | L | -0.3559 | |
| 9 | A | L | -0.4720 | |
| 10 | T | L | -0.4682 | |
| 11 | L | L | -0.1556 | |
| 12 | S | L | -0.2636 | |
| 13 | L | L | -0.4932 | |
| 14 | S | L | -0.8384 | |
| 15 | P | L | -1.1367 | |
| 16 | G | L | -1.5690 | |
| 17 | E | L | -2.0059 | |
| 18 | R | L | -2.4031 | |
| 19 | A | L | 0.0000 | |
| 20 | T | L | -0.6394 | |
| 21 | L | L | 0.0000 | |
| 22 | S | L | -0.7933 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.2494 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -0.9912 | |
| 27 | Q | L | -1.6389 | |
| 28 | S | L | -1.2147 | |
| 29 | V | L | 0.0000 | |
| 36 | S | L | -0.4179 | |
| 37 | S | L | -0.1841 | |
| 38 | Y | L | 0.3260 | |
| 39 | L | L | 0.0000 | |
| 40 | A | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.2457 | |
| 46 | P | L | -0.9951 | |
| 47 | G | L | -1.3791 | |
| 48 | Q | L | -2.0018 | |
| 49 | A | L | -1.2215 | |
| 50 | P | L | 0.0000 | |
| 51 | R | L | -0.8951 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.3948 | |
| 56 | D | L | 0.0000 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.8524 | |
| 66 | N | L | -1.2537 | |
| 67 | R | L | -1.4642 | |
| 68 | A | L | 0.0000 | |
| 69 | T | L | -0.6661 | |
| 70 | G | L | -0.6662 | |
| 71 | I | L | 0.0000 | |
| 72 | P | L | -0.4258 | |
| 74 | A | L | -0.3588 | |
| 75 | R | L | -0.7400 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.6973 | |
| 78 | G | L | -0.6773 | |
| 79 | S | L | -0.7104 | |
| 80 | G | L | -0.9963 | |
| 83 | S | L | -0.8737 | |
| 84 | G | L | -1.0437 | |
| 85 | T | L | -1.6647 | |
| 86 | D | L | -1.9528 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.7261 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.6090 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.2468 | |
| 93 | S | L | -1.5584 | |
| 94 | L | L | 0.0000 | |
| 95 | E | L | -1.5515 | |
| 96 | P | L | -0.8465 | |
| 97 | E | L | -1.2988 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | -0.0836 | |
| 100 | A | L | 0.0000 | |
| 101 | V | L | -0.2799 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | R | L | -0.2317 | |
| 108 | S | L | -0.5001 | |
| 109 | N | L | -1.4037 | |
| 114 | W | L | -0.7829 | |
| 115 | P | L | -0.8905 | |
| 116 | W | L | 0.0000 | |
| 117 | T | L | -0.2189 | |
| 118 | F | L | 0.0475 | |
| 119 | G | L | 0.0000 | |
| 120 | Q | L | -1.2148 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.0904 | |
| 124 | V | L | 0.0000 | |
| 125 | E | L | -0.0089 | |
| 126 | I | L | 1.0092 | |
| 127 | K | L | -0.8109 |