| Chain sequence(s) |
A: KGHKGHK
C: KGHKGHK B: KGHKGHK D: KGHKGHK input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:47)
[INFO] Main: Simulation completed successfully. (00:02:48)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | K | A | -4.3767 | |
| 2 | G | A | 0.0000 | |
| 3 | H | A | -4.0767 | |
| 4 | K | A | -4.4637 | |
| 5 | G | A | -2.7498 | |
| 6 | H | A | -2.4806 | |
| 7 | K | A | -2.6997 | |
| 1 | K | B | -3.7761 | |
| 2 | G | B | -4.5696 | |
| 3 | H | B | -4.7312 | |
| 4 | K | B | -5.1436 | |
| 5 | G | B | -4.0966 | |
| 6 | H | B | -3.7047 | |
| 7 | K | B | -2.6626 | |
| 1 | K | C | -4.1776 | |
| 2 | G | C | -3.6836 | |
| 3 | H | C | -3.7944 | |
| 4 | K | C | -4.1525 | |
| 5 | G | C | -2.9823 | |
| 6 | H | C | -3.0036 | |
| 7 | K | C | -3.0263 | |
| 1 | K | D | -4.7310 | |
| 2 | G | D | 0.0000 | |
| 3 | H | D | -4.0361 | |
| 4 | K | D | -4.2255 | |
| 5 | G | D | -2.8597 | |
| 6 | H | D | -3.2763 | |
| 7 | K | D | -2.8455 |