Project name: Adnectin_allproteins

Status: done

Started: 2025-07-20 00:28:04
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Chain sequence(s) A: VSDVPRDLEVVAATPTSLLISWSARLKVARYYRITYGETGGNSPVQEFTVPKNVYTATISGLKPGVDYTITVYAVTLLRDYGPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:30)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:31)
Show buried residues

Minimal score value
-2.5318
Maximal score value
1.6162
Average score
-0.5192
Total score value
-46.7246

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.6162
2 S A 0.4482
3 D A -0.5254
4 V A -0.0803
5 P A 0.0000
6 R A -1.7243
7 D A -2.5318
8 L A 0.0000
9 E A -1.8243
10 V A -0.0638
11 V A 1.5650
12 A A 0.9023
13 A A 0.4705
14 T A -0.4205
15 P A -0.9102
16 T A -1.0500
17 S A -0.5873
18 L A 0.0000
19 L A 0.7231
20 I A 0.0000
21 S A 0.0850
22 W A 0.0000
23 S A -0.4124
24 A A 0.0762
25 R A 0.0000
26 L A 1.3349
27 K A -0.1194
28 V A 0.7679
29 A A 0.0000
30 R A -1.4558
31 Y A -0.3901
32 Y A 0.0000
33 R A -1.1635
34 I A 0.0000
35 T A 0.0000
36 Y A -0.6690
37 G A -1.3450
38 E A -2.4345
39 T A -1.6645
40 G A -1.6750
41 G A -1.6696
42 N A -1.7838
43 S A -1.1541
44 P A -0.6303
45 V A -0.1703
46 Q A -1.4241
47 E A -1.8155
48 F A -0.6190
49 T A -0.3437
50 V A 0.0000
51 P A -0.7957
52 K A -1.0475
53 N A -0.9223
54 V A 0.6953
55 Y A 1.3132
56 T A 0.8153
57 A A 0.0000
58 T A 0.2104
59 I A 0.0000
60 S A -0.6593
61 G A -1.0590
62 L A 0.0000
63 K A -2.2916
64 P A -1.6083
65 G A -1.2280
66 V A -1.3385
67 D A -1.9566
68 Y A 0.0000
69 T A -1.0397
70 I A 0.0000
71 T A -0.2209
72 V A 0.0000
73 Y A -0.4020
74 A A 0.0000
75 V A 0.0000
76 T A -0.3893
77 L A 1.4410
78 L A 0.8558
79 R A -1.6784
80 D A -2.4847
81 Y A 0.0000
82 G A -0.8634
83 P A -0.5298
84 I A -0.1162
85 S A -0.6453
86 I A -0.9484
87 N A -1.9596
88 Y A -1.5927
89 R A -2.0816
90 T A -1.5286
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Laboratory of Theory of Biopolymers 2018