Project name: Asparaginase-3NTX

Status: done

Started: 2024-07-04 19:26:29
Settings
Chain sequence(s) A: QKKSIYVAYTGGTIGMQRSDNGYIPVSGHLQQRRQLALMPEFHRPEMPDFTIHEYAPLIDSSSDMTPEDWQHIANNDIQQQQNYDLYDGFVILHGTDTMAFTASALSFMLENLAKPVIITGSQQIPLAEELRSSDGQTNLLNALYLAANHPVNEVSLFFNNNQLFRGNRTTTKAHADDGFDTFASSPNLSVLLEAGIHHIRRQQSSSVVSPTSNGPLIVHRITPQPIGVVTIYPGISGAVVRRNFLLQQPVKALILLRSYGVGNAPQKAELLDELKNASDRGIVVVVNLTQCISGSVNMGNALAQAGVISGFDMTVEAALTKLHYLLSQSLSPNEEIRQQLMQQNLRGELTDT
B: QKKSIYVAYTGGTIGMQRSDNGYIPVSGHLQQRQQLALMPEFHRPEMPDFTIHEYAPLIDSSSDMTPEDWQHIANNDIQQQNYDLYDGFVILHGTDTMAFTASALSFMLENLAKPVIITGSQIPLAEELRSDGQTNLLNALYLAANHPVNEVSSLFFNNNQLFRGNRTTTKAHADGFDTTFASPNLSSVLLEAGIHHIRRQQSSVVSPTSNGPLIVHRITPQPIGVVTIYPGISGAVVRRNFLLQQPVKALILLRSYGVGNAPQKAELLDELKNASDRGIVVVNLTQCISGSVNNMGNALAQAGVISGFDMTVEAALTKLHYLLSQSLSPNEIRQQLMQQNLRGELTDT
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:32)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:39)
Show buried residues

Minimal score value
-3.8
Maximal score value
1.9461
Average score
-0.5922
Total score value
-392.0097

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
2 Q A -3.2809
3 K A -3.0979
4 K A -2.3333
5 S A -1.1956
6 I A 0.0000
7 Y A 0.0000
8 V A 0.0000
9 A A 0.0000
10 Y A 0.0000
11 T A 0.0000
12 G A 0.0000
13 G A -0.5455
14 T A -0.3001
15 I A 0.0000
16 G A 0.0000
17 M A -0.2642
18 Q A -1.1384
19 R A -2.4455
20 S A -2.1587
21 D A -2.7451
22 N A -2.3760
23 G A -1.5966
24 Y A -0.7198
25 I A 0.0867
26 P A -0.0613
27 V A 0.2036
28 S A -0.5318
29 G A -1.2870
30 H A -1.3676
31 L A 0.0000
32 Q A -2.1189
33 R A -2.2913
34 Q A -1.0242
35 L A 0.0000
36 A A -0.4680
37 L A 0.5595
38 M A -0.0617
39 P A -0.5964
40 E A -1.1580
41 F A 0.0000
42 H A -2.1352
43 R A -2.6380
44 P A -2.6180
45 E A -3.1512
46 M A 0.0000
47 P A 0.0000
48 D A -2.2211
49 F A -0.5246
50 T A -0.2721
51 I A -0.3534
52 H A -0.8347
53 E A -0.8496
54 Y A 0.0000
55 A A -0.1544
56 P A -0.3295
57 L A -0.2056
58 I A -0.9639
59 D A -2.5381
60 S A 0.0000
61 S A -2.1231
62 D A -2.6157
63 M A -1.5698
64 T A -0.7364
65 P A -0.5260
66 E A -1.5501
67 D A -1.2882
68 W A 0.0000
69 Q A 0.0000
70 H A -1.2176
71 I A 0.0000
72 A A 0.0000
73 N A -0.8658
74 D A 0.0000
75 I A 0.0000
76 Q A -0.9722
77 Q A -1.7458
78 N A -0.8937
79 Y A -0.9673
80 D A -1.4332
81 L A 0.3176
82 Y A -0.3069
83 D A -1.2788
84 G A 0.0000
85 F A 0.0000
86 V A 0.0000
87 I A 0.0000
88 L A 0.0000
89 H A 0.0000
90 G A -1.0397
91 T A -1.2619
92 D A -2.3429
93 T A -1.3075
94 M A 0.0000
95 A A 0.0000
96 F A 0.2476
97 T A 0.0000
98 A A 0.0000
99 S A 0.0000
100 A A 0.0000
101 L A 0.0000
102 S A 0.0000
103 F A 0.0000
104 M A 0.0000
105 L A 0.0000
106 E A -0.5434
107 N A -0.8828
108 L A 0.0000
109 A A -0.7697
110 K A -0.9782
111 P A 0.0000
112 V A 0.0000
113 I A 0.0000
114 I A 0.0000
115 T A 0.0000
116 G A 0.0000
117 S A 0.0000
118 Q A -0.1105
119 I A -0.2523
120 P A 0.0000
121 L A 0.0000
122 A A -0.7198
123 E A -0.9445
124 L A 0.1901
125 R A -1.4107
126 S A 0.0000
127 D A -1.1838
128 G A 0.0000
129 Q A -0.6622
130 T A -0.9175
131 N A 0.0000
132 L A 0.0000
133 L A 0.0291
134 N A -0.2882
135 A A 0.0000
136 L A 0.0000
137 Y A -0.2447
138 L A 0.0000
139 A A 0.0000
140 A A 0.0000
141 N A -1.1893
142 H A -1.0385
143 P A -0.9177
144 V A 0.0000
145 N A -0.9411
146 E A 0.0000
147 V A 0.0000
148 S A 0.0000
149 L A 0.0000
150 F A 0.0000
151 F A 0.0000
152 N A -2.2489
153 N A -2.2022
154 Q A -2.0355
155 L A 0.0000
156 F A 0.0000
157 R A 0.0000
158 G A 0.0000
159 N A 0.0000
160 R A 0.0000
161 T A 0.0000
162 T A -0.1725
163 K A -0.9604
164 A A -0.4530
165 H A -1.3338
166 A A -1.4208
167 D A -1.8360
168 G A -0.8829
169 F A 0.2404
170 D A -0.8123
171 T A -0.7454
172 F A 0.0000
173 A A -0.3919
174 S A 0.1397
175 P A 0.2716
176 N A 0.0228
177 L A 0.1444
178 S A -0.0363
179 V A -0.3685
180 L A 0.0000
181 L A 0.0000
182 E A -2.6358
183 A A 0.0000
184 G A -0.8903
185 I A 0.9234
186 H A -0.6548
187 I A -1.2998
188 R A -2.6336
189 R A -2.0704
190 Q A -1.2827
191 S A -0.5442
192 S A -0.0501
193 V A 0.0000
194 V A 1.5392
195 S A 0.5024
196 P A -0.2567
197 T A -0.5293
198 S A -1.1771
199 N A -1.6825
200 G A -1.1579
201 P A -0.4899
202 L A -0.2034
203 I A 0.2095
204 V A 0.0203
205 H A -0.2257
206 R A -0.4436
207 I A 0.0000
208 T A -0.4229
209 P A -0.3536
210 Q A -0.3045
211 P A -0.3513
212 I A 0.2893
213 G A 0.6245
214 V A 1.0681
215 V A 0.7038
216 T A 0.2888
217 I A 0.0000
218 Y A 0.7403
219 P A -0.0217
220 G A -0.4200
221 I A 0.0000
222 S A -0.5007
223 G A 0.0000
224 A A -0.7373
225 V A -0.1281
226 V A 0.0000
227 R A -2.4309
228 N A -1.6110
229 F A -0.3324
230 L A 0.0000
231 L A -0.9230
232 Q A -1.3170
233 P A -0.9192
234 V A -0.6420
235 K A -1.2054
236 A A 0.0000
237 L A 0.0000
238 I A 0.0000
239 L A 0.0000
240 R A -0.2449
241 S A 0.0000
242 Y A 0.2342
243 G A 0.3698
244 V A 1.0351
245 G A 0.0000
246 N A -1.1173
247 A A 0.0000
248 P A -1.0973
249 Q A -1.7895
250 K A -1.7261
251 A A -1.6459
252 E A -2.4559
253 L A 0.0000
254 L A -2.2267
255 D A -3.3413
256 E A -3.0649
257 L A 0.0000
258 K A -3.4768
259 N A -3.7819
260 A A 0.0000
261 S A -2.8665
262 D A -3.5898
263 R A -3.3661
264 G A -2.1831
265 I A 0.0000
266 V A 0.0000
267 V A 0.0000
268 V A 0.0000
269 N A 0.0000
270 L A 0.0000
271 T A 0.2866
272 Q A 0.4253
273 C A 1.3398
274 I A 1.9432
275 S A 0.7256
276 G A 0.2175
277 S A -0.0515
278 V A 0.0000
279 N A -0.8309
280 M A -0.0778
286 G A -0.8376
287 N A -1.1812
288 A A -1.2476
289 L A 0.0000
290 A A -0.8224
291 Q A -1.5838
292 A A 0.0000
293 G A -1.2868
294 V A 0.0000
295 I A -0.1147
296 S A 0.0000
297 G A 0.0000
298 F A -0.4847
299 D A 0.0000
300 M A 0.0000
301 T A 0.0000
302 V A 0.4924
303 E A 0.2166
304 A A 0.0000
305 A A 0.0000
306 L A 0.4874
307 T A 0.0000
308 K A 0.0000
309 L A 0.0000
310 H A 0.0000
311 Y A 0.0000
312 L A 0.0000
313 L A -0.0902
314 S A -0.2228
315 Q A -0.3657
316 S A -0.4728
317 L A -0.4025
318 S A -0.9549
319 P A -1.8519
320 N A -2.3122
321 E A -2.3366
322 I A 0.0000
323 R A -1.7197
324 Q A -2.1659
325 L A -1.3064
326 M A 0.0000
327 Q A -1.3948
328 Q A -1.8689
329 N A -1.8651
330 L A -0.6438
331 R A -0.6154
332 G A 0.0000
333 E A 0.0000
334 L A 0.0000
335 T A -1.3045
336 D A -2.3443
337 T A -1.0709
2 Q B -3.1848
3 K B -3.1145
4 K B -2.3941
5 S B -1.2725
6 I B 0.0000
7 Y B 0.0000
8 V B 0.0000
9 A B 0.0000
10 Y B 0.0000
11 T B 0.0000
12 G B 0.0000
13 G B -0.6236
14 T B -0.3663
15 I B 0.0000
16 G B 0.0000
17 M B -0.4479
18 Q B -1.1826
19 R B -2.5015
20 S B 0.0000
21 D B -3.0082
22 N B -2.6805
23 G B -1.6994
24 Y B -1.0151
25 I B 0.0000
26 P B -0.5523
27 V B 0.0000
28 S B -0.4176
29 G B -0.7818
30 H B -0.9121
31 L B 0.0000
32 Q B -1.0335
33 R B -1.3723
34 Q B -0.4806
35 L B 0.0000
36 A B 0.0213
37 L B 1.0142
38 M B 0.1937
39 P B -0.3867
40 E B -0.9699
41 F B 0.0000
42 H B -1.7350
43 R B -2.2211
44 P B -2.4084
45 E B -3.0377
46 M B 0.0000
47 P B 0.0000
48 D B -2.2189
49 F B -0.6608
50 T B -0.1832
51 I B -0.0636
52 H B -0.5240
53 E B -0.4989
54 Y B 0.0000
55 A B -0.0807
56 P B -0.2208
57 L B -0.1660
58 I B -0.9745
59 D B -2.6688
60 S B 0.0000
61 S B -2.1072
62 D B -2.6087
63 M B -1.7425
64 T B -1.1989
65 P B -1.4262
66 E B -2.5423
67 D B -1.8340
68 W B 0.0000
69 Q B -1.9499
70 H B -1.9353
71 I B 0.0000
72 A B 0.0000
73 N B -1.8636
74 D B 0.0000
75 I B 0.0000
76 Q B -1.6680
77 Q B -1.9018
78 N B -1.1340
79 Y B -1.2021
80 D B -1.5359
81 L B 0.2159
82 Y B 0.0000
83 D B -1.2891
84 G B 0.0000
85 F B 0.0000
86 V B 0.0000
87 I B 0.0000
88 L B 0.0000
89 H B 0.0000
90 G B -1.0331
91 T B -1.2476
92 D B -2.3305
93 T B -1.2925
94 M B 0.0000
95 A B 0.0000
96 F B 0.2495
97 T B 0.0000
98 A B 0.0000
99 S B 0.0000
100 A B 0.0000
101 L B 0.0000
102 S B 0.0000
103 F B 0.0000
104 M B 0.0000
105 L B 0.0000
106 E B -0.2443
107 N B 0.0000
108 L B 0.0000
109 A B -0.5883
110 K B -0.9528
111 P B 0.0000
112 V B 0.0000
113 I B 0.0000
114 I B 0.0000
115 T B 0.0000
116 G B 0.0000
117 S B 0.0000
118 Q B 0.0184
119 I B -0.1231
120 P B 0.0000
121 L B 0.0000
122 A B -0.6635
123 E B -0.9483
124 L B 0.1758
125 R B -1.4125
126 S B 0.0000
127 D B -1.1585
128 G B 0.0000
129 Q B -0.6028
130 T B -0.9195
131 N B 0.0000
132 L B 0.0000
133 L B -0.0180
134 N B -0.3365
135 A B 0.0000
136 L B 0.0000
137 Y B -0.3120
138 L B 0.0000
139 A B 0.0000
140 A B 0.0000
141 N B -1.2289
142 H B -1.0774
143 P B -0.9445
144 V B 0.0000
145 N B -0.9329
146 E B 0.0000
147 V B 0.0000
148 S B 0.0000
149 L B 0.0000
150 F B 0.0000
151 F B 0.0000
152 N B -2.2864
153 N B -2.2819
154 Q B -2.0073
155 L B 0.0000
156 F B 0.0000
157 R B 0.0000
158 G B 0.0000
159 N B 0.0000
160 R B 0.0000
161 T B 0.0000
162 T B -0.1720
163 K B -0.9406
164 A B -0.6238
165 H B -1.2958
166 A B -1.3125
167 D B -1.7615
168 G B -0.7500
169 F B 0.5119
170 D B -0.6671
171 T B -0.6849
172 F B 0.0000
173 A B -0.3875
174 S B 0.1322
175 P B 0.2604
176 N B 0.0015
177 L B 0.1281
178 S B -0.0128
179 V B -0.3206
180 L B 0.0000
181 L B 0.0000
182 E B -2.4808
183 A B 0.0000
184 G B -0.8344
185 I B 0.9460
186 H B -0.6422
187 I B -1.2792
188 R B -2.5968
189 R B -2.0997
190 Q B -1.1003
191 S B -0.4175
192 S B 0.0071
193 V B 0.0000
194 V B 1.5704
195 S B 0.4980
196 P B -0.2225
197 T B -0.4776
198 S B -1.1113
199 N B -1.6524
200 G B -1.0487
201 P B -0.3777
202 L B 0.1370
203 I B 0.6311
204 V B -0.1401
205 H B -0.9199
206 R B -2.1624
207 I B 0.0000
208 T B -1.1134
209 P B -0.6425
210 Q B -0.3494
211 P B -0.4653
212 I B 0.2614
213 G B 0.5895
214 V B 1.0633
215 V B 0.7021
216 T B 0.2911
217 I B 0.0000
218 Y B 0.7269
219 P B -0.0305
220 G B -0.4139
221 I B 0.0000
222 S B -0.4432
223 G B 0.0000
224 A B -0.6147
225 V B 0.0145
226 V B 0.0000
227 R B -2.1454
228 N B -1.4489
229 F B -0.2469
230 L B 0.0000
231 L B -0.8059
232 Q B -1.2895
233 P B -0.9113
234 V B -0.6509
235 K B -1.2473
236 A B 0.0000
237 L B 0.0000
238 I B 0.0000
239 L B 0.0000
240 R B -0.2368
241 S B 0.0000
242 Y B 0.2245
243 G B 0.3734
244 V B 1.0121
245 G B 0.0000
246 N B -1.1285
247 A B 0.0000
248 P B -1.0741
249 Q B -1.7302
250 K B -1.6418
251 A B -1.6431
252 E B -2.5216
253 L B 0.0000
254 L B -2.2609
255 D B -3.3736
256 E B -3.0102
257 L B 0.0000
258 K B -3.5978
259 N B -3.8000
260 A B 0.0000
261 S B -2.9276
262 D B -3.5969
263 R B -3.4116
264 G B -2.2102
265 I B 0.0000
266 V B 0.0000
267 V B 0.0000
268 V B 0.0000
269 N B 0.0000
270 L B 0.0000
271 T B 0.2937
272 Q B 0.4302
273 C B 1.3505
274 I B 1.9461
275 S B 0.7196
276 G B 0.2024
277 S B -0.0609
278 V B 0.0000
279 N B -0.8710
280 M B -0.1521
286 G B -0.8405
287 N B -1.1128
288 A B -1.2281
289 L B 0.0000
290 A B -0.8229
291 Q B -1.5968
292 A B 0.0000
293 G B -1.3119
294 V B 0.0000
295 I B -0.0999
296 S B 0.0000
297 G B 0.0000
298 F B -0.4875
299 D B 0.0000
300 M B 0.0000
301 T B 0.3783
302 V B 0.4884
303 E B 0.2125
304 A B 0.0000
305 A B 0.0000
306 L B 0.4814
307 T B 0.0000
308 K B 0.0000
309 L B 0.0000
310 H B 0.0000
311 Y B 0.0000
312 L B 0.0000
313 L B -0.1085
314 S B -0.5830
315 Q B -0.6218
316 S B -0.3089
317 L B -0.3924
318 S B -0.9106
319 P B -1.7795
320 N B -2.1757
321 E B -2.1147
322 I B 0.0000
323 R B -1.5763
324 Q B -1.9454
325 L B -1.2322
326 M B 0.0000
327 Q B -1.4385
328 Q B -1.9898
329 N B -1.9474
330 L B -0.6951
331 R B -0.6008
332 G B 0.0000
333 E B 0.0000
334 L B 0.0000
335 T B -1.3545
336 D B -2.3641
337 T B -0.9352
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Laboratory of Theory of Biopolymers 2018