Project name: query_structure

Status: done

Started: 2026-03-16 23:29:50
Settings
Chain sequence(s) A: GSARDDVLIGDAGANWLFGLAGNDVLSGGAGDDLLEGDEGSDLLSGDAGNDALTGGQGDDTYLFGVGYGHDDIAESGGGHDTIRINAGADQLWFARQGNDLEIRILGTDDALTVHDWYRDADHRVEIIHAANQAVDQAGIEKLVEAMAQYPD
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:02)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:03)
Show buried residues

Minimal score value
-3.2069
Maximal score value
2.1845
Average score
-0.968
Total score value
-147.1372

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.2716
2 S A -0.7602
3 A A -1.5422
4 R A -2.8292
5 D A -2.7673
6 D A -0.5176
7 V A 1.7811
8 L A 2.0590
9 I A 2.1845
10 G A 0.1978
11 D A -1.4725
12 A A -1.2403
13 G A -1.1269
14 A A -0.9831
15 N A 0.0366
16 W A 1.1262
17 L A 1.3493
18 F A 0.8483
19 G A 0.0000
20 L A -0.5025
21 A A -1.6466
22 G A -2.5001
23 N A -2.4663
24 D A 0.0000
25 V A 1.2645
26 L A 0.0000
27 S A 1.0499
28 G A 0.0000
29 G A -0.6455
30 A A -1.2607
31 G A -1.7190
32 D A -2.3353
33 D A 0.0000
34 L A 0.1556
35 L A 0.0000
36 E A -0.1322
37 G A 0.0000
38 D A -1.5996
39 E A -2.7195
40 G A -2.5738
41 S A -2.0955
42 D A 0.0000
43 L A 0.4969
44 L A 0.0000
45 S A 0.0000
46 G A 0.0000
47 D A -0.6068
48 A A -0.7167
49 G A -1.6897
50 N A -2.2989
51 D A 0.0000
52 A A -0.6252
53 L A 0.0000
54 T A -0.4112
55 G A 0.0000
56 G A 0.0000
57 Q A -2.7107
58 G A -2.6392
59 D A -2.8601
60 D A 0.0000
61 T A -0.4852
62 Y A 0.0000
63 L A -0.5512
64 F A 0.0000
65 G A 0.0000
66 V A 1.0122
67 G A 0.0422
68 Y A -0.2463
69 G A -1.2762
70 H A -1.7839
71 D A 0.0000
72 D A -0.8618
73 I A 0.0000
74 A A -0.5134
75 E A 0.0000
76 S A -1.3421
77 G A -2.1055
78 G A -2.2200
79 G A -2.4841
80 H A -2.2531
81 D A 0.0000
82 T A -1.2877
83 I A 0.0000
84 R A -2.0256
85 I A 0.0000
86 N A -1.4545
87 A A 0.0000
88 G A -1.7646
89 A A -1.7458
90 D A -2.2213
91 Q A -1.8897
92 L A 0.0000
93 W A -0.3263
94 F A 0.0000
95 A A -1.7461
96 R A -3.2010
97 Q A -2.8749
98 G A -2.5452
99 N A -3.2069
100 D A -2.7378
101 L A 0.0000
102 E A -1.4889
103 I A 0.0000
104 R A -0.8091
105 I A 0.0000
106 L A -0.2379
107 G A -0.5027
108 T A -0.7981
109 D A -1.7670
110 D A 0.0000
111 A A -0.8398
112 L A 0.0000
113 T A 0.0000
114 V A 0.0000
115 H A -1.6718
116 D A -2.6401
117 W A 0.0000
118 Y A -2.5037
119 R A -3.1919
120 D A -2.5237
121 A A -1.9883
122 D A -2.9435
123 H A -2.3937
124 R A -2.1351
125 V A 0.0000
126 E A -2.1798
127 I A -1.2521
128 I A 0.0000
129 H A -1.7391
130 A A 0.0000
131 A A -1.6835
132 N A -2.1209
133 Q A -1.9685
134 A A -1.2572
135 V A -1.2047
136 D A -2.1625
137 Q A -1.7495
138 A A -1.4016
139 G A -1.6136
140 I A 0.0000
141 E A -2.7234
142 K A -2.6585
143 L A -1.2743
144 V A 0.0000
145 E A -2.8346
146 A A -1.3800
147 M A -1.0115
148 A A -1.1116
149 Q A -1.1339
150 Y A 0.0049
151 P A -0.7475
152 D A -1.6864
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018