| Chain sequence(s) |
A: FFGHKGF
C: FFGHKGF B: FFGHKGF E: FFGHKGF D: FFGHKGF G: FFGHKGF F: FFGHKGF I: FFGHKGF H: FFGHKGF K: FFGHKGF J: FFGHKGF M: FFGHKGF L: FFGHKGF O: FFGHKGF N: FFGHKGF Q: FFGHKGF P: FFGHKGF S: FFGHKGF R: FFGHKGF T: FFGHKGF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:09)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:09)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:09)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:09)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:09)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:11:38)
[INFO] Main: Simulation completed successfully. (00:11:44)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 1.5260 | |
| 2 | F | A | 1.9454 | |
| 3 | G | A | 0.0000 | |
| 4 | H | A | 0.0000 | |
| 5 | K | A | -0.1624 | |
| 6 | G | A | 0.8205 | |
| 7 | F | A | 1.7482 | |
| 1 | F | B | 1.6090 | |
| 2 | F | B | 2.1497 | |
| 3 | G | B | 0.0000 | |
| 4 | H | B | 0.0000 | |
| 5 | K | B | -0.2256 | |
| 6 | G | B | 0.9948 | |
| 7 | F | B | 1.8034 | |
| 1 | F | C | 1.6823 | |
| 2 | F | C | 2.5360 | |
| 3 | G | C | 0.0000 | |
| 4 | H | C | 0.0000 | |
| 5 | K | C | -0.4705 | |
| 6 | G | C | 0.4590 | |
| 7 | F | C | 2.0371 | |
| 1 | F | D | 2.0487 | |
| 2 | F | D | 2.6649 | |
| 3 | G | D | 0.0000 | |
| 4 | H | D | 0.0000 | |
| 5 | K | D | -0.7741 | |
| 6 | G | D | 0.3309 | |
| 7 | F | D | 1.9532 | |
| 1 | F | E | 3.4948 | |
| 2 | F | E | 3.4486 | |
| 3 | G | E | 0.6855 | |
| 4 | H | E | -1.0868 | |
| 5 | K | E | -1.9983 | |
| 6 | G | E | -0.5801 | |
| 7 | F | E | 1.5786 | |
| 1 | F | F | 3.6281 | |
| 2 | F | F | 3.5648 | |
| 3 | G | F | 0.8483 | |
| 4 | H | F | -0.7947 | |
| 5 | K | F | -1.5873 | |
| 6 | G | F | -0.3437 | |
| 7 | F | F | 1.6093 | |
| 1 | F | G | 1.4931 | |
| 2 | F | G | 2.0535 | |
| 3 | G | G | 0.0000 | |
| 4 | H | G | 0.0000 | |
| 5 | K | G | -0.4486 | |
| 6 | G | G | 0.5661 | |
| 7 | F | G | 1.7609 | |
| 1 | F | H | 1.9669 | |
| 2 | F | H | 2.2023 | |
| 3 | G | H | 0.0000 | |
| 4 | H | H | 0.0000 | |
| 5 | K | H | -0.5341 | |
| 6 | G | H | 0.1996 | |
| 7 | F | H | 1.6606 | |
| 1 | F | I | 1.9260 | |
| 2 | F | I | 2.6834 | |
| 3 | G | I | 0.0000 | |
| 4 | H | I | 0.0000 | |
| 5 | K | I | -0.8566 | |
| 6 | G | I | -0.0016 | |
| 7 | F | I | 1.7474 | |
| 1 | F | J | 2.3057 | |
| 2 | F | J | 3.0594 | |
| 3 | G | J | 0.0000 | |
| 4 | H | J | 0.0000 | |
| 5 | K | J | -1.2299 | |
| 6 | G | J | -0.0706 | |
| 7 | F | J | 1.5963 | |
| 1 | F | K | 3.0625 | |
| 2 | F | K | 3.3218 | |
| 3 | G | K | 0.9073 | |
| 4 | H | K | -0.3354 | |
| 5 | K | K | -1.3211 | |
| 6 | G | K | -0.0675 | |
| 7 | F | K | 2.0591 | |
| 1 | F | L | 2.6070 | |
| 2 | F | L | 2.5634 | |
| 3 | G | L | 0.5449 | |
| 4 | H | L | -0.2447 | |
| 5 | K | L | -1.2082 | |
| 6 | G | L | 0.2582 | |
| 7 | F | L | 2.3681 | |
| 1 | F | M | 1.7139 | |
| 2 | F | M | 2.1878 | |
| 3 | G | M | 0.0000 | |
| 4 | H | M | 0.0000 | |
| 5 | K | M | -0.7509 | |
| 6 | G | M | 0.3290 | |
| 7 | F | M | 1.8954 | |
| 1 | F | N | 1.7407 | |
| 2 | F | N | 1.9777 | |
| 3 | G | N | 0.0000 | |
| 4 | H | N | 0.0000 | |
| 5 | K | N | -0.5104 | |
| 6 | G | N | 0.4710 | |
| 7 | F | N | 1.9571 | |
| 1 | F | O | 1.8995 | |
| 2 | F | O | 1.9661 | |
| 3 | G | O | 0.0000 | |
| 4 | H | O | 0.0000 | |
| 5 | K | O | -0.4452 | |
| 6 | G | O | 0.4567 | |
| 7 | F | O | 1.8363 | |
| 1 | F | P | 1.6378 | |
| 2 | F | P | 2.0296 | |
| 3 | G | P | 0.0000 | |
| 4 | H | P | 0.0000 | |
| 5 | K | P | -0.5645 | |
| 6 | G | P | 0.4052 | |
| 7 | F | P | 1.9949 | |
| 1 | F | Q | 1.9672 | |
| 2 | F | Q | 2.4660 | |
| 3 | G | Q | 0.0000 | |
| 4 | H | Q | 0.0000 | |
| 5 | K | Q | -0.4645 | |
| 6 | G | Q | 0.5574 | |
| 7 | F | Q | 2.1926 | |
| 1 | F | R | 2.6083 | |
| 2 | F | R | 2.9402 | |
| 3 | G | R | 1.2049 | |
| 4 | H | R | 0.0000 | |
| 5 | K | R | -0.4734 | |
| 6 | G | R | 0.5931 | |
| 7 | F | R | 2.7478 | |
| 1 | F | S | 3.1209 | |
| 2 | F | S | 3.3359 | |
| 3 | G | S | 1.0439 | |
| 4 | H | S | 0.0246 | |
| 5 | K | S | -0.8697 | |
| 6 | G | S | 0.2863 | |
| 7 | F | S | 2.7104 | |
| 1 | F | T | 2.5853 | |
| 2 | F | T | 2.9595 | |
| 3 | G | T | 0.5655 | |
| 4 | H | T | -0.4306 | |
| 5 | K | T | -1.2854 | |
| 6 | G | T | -0.0990 | |
| 7 | F | T | 1.9630 |