Project name: 4dba9364894b141

Status: done

Started: 2026-05-21 15:13:38
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Chain sequence(s) A: FFGHKGF
C: FFGHKGF
B: FFGHKGF
E: FFGHKGF
D: FFGHKGF
G: FFGHKGF
F: FFGHKGF
I: FFGHKGF
H: FFGHKGF
K: FFGHKGF
J: FFGHKGF
M: FFGHKGF
L: FFGHKGF
O: FFGHKGF
N: FFGHKGF
Q: FFGHKGF
P: FFGHKGF
S: FFGHKGF
R: FFGHKGF
T: FFGHKGF
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:09)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:09)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:09)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:09)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:09)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:11:38)
[INFO]       Main:     Simulation completed successfully.                                          (00:11:44)
Show buried residues

Minimal score value
-1.9983
Maximal score value
3.6281
Average score
0.9158
Total score value
128.2167

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 F A 1.5260
2 F A 1.9454
3 G A 0.0000
4 H A 0.0000
5 K A -0.1624
6 G A 0.8205
7 F A 1.7482
1 F B 1.6090
2 F B 2.1497
3 G B 0.0000
4 H B 0.0000
5 K B -0.2256
6 G B 0.9948
7 F B 1.8034
1 F C 1.6823
2 F C 2.5360
3 G C 0.0000
4 H C 0.0000
5 K C -0.4705
6 G C 0.4590
7 F C 2.0371
1 F D 2.0487
2 F D 2.6649
3 G D 0.0000
4 H D 0.0000
5 K D -0.7741
6 G D 0.3309
7 F D 1.9532
1 F E 3.4948
2 F E 3.4486
3 G E 0.6855
4 H E -1.0868
5 K E -1.9983
6 G E -0.5801
7 F E 1.5786
1 F F 3.6281
2 F F 3.5648
3 G F 0.8483
4 H F -0.7947
5 K F -1.5873
6 G F -0.3437
7 F F 1.6093
1 F G 1.4931
2 F G 2.0535
3 G G 0.0000
4 H G 0.0000
5 K G -0.4486
6 G G 0.5661
7 F G 1.7609
1 F H 1.9669
2 F H 2.2023
3 G H 0.0000
4 H H 0.0000
5 K H -0.5341
6 G H 0.1996
7 F H 1.6606
1 F I 1.9260
2 F I 2.6834
3 G I 0.0000
4 H I 0.0000
5 K I -0.8566
6 G I -0.0016
7 F I 1.7474
1 F J 2.3057
2 F J 3.0594
3 G J 0.0000
4 H J 0.0000
5 K J -1.2299
6 G J -0.0706
7 F J 1.5963
1 F K 3.0625
2 F K 3.3218
3 G K 0.9073
4 H K -0.3354
5 K K -1.3211
6 G K -0.0675
7 F K 2.0591
1 F L 2.6070
2 F L 2.5634
3 G L 0.5449
4 H L -0.2447
5 K L -1.2082
6 G L 0.2582
7 F L 2.3681
1 F M 1.7139
2 F M 2.1878
3 G M 0.0000
4 H M 0.0000
5 K M -0.7509
6 G M 0.3290
7 F M 1.8954
1 F N 1.7407
2 F N 1.9777
3 G N 0.0000
4 H N 0.0000
5 K N -0.5104
6 G N 0.4710
7 F N 1.9571
1 F O 1.8995
2 F O 1.9661
3 G O 0.0000
4 H O 0.0000
5 K O -0.4452
6 G O 0.4567
7 F O 1.8363
1 F P 1.6378
2 F P 2.0296
3 G P 0.0000
4 H P 0.0000
5 K P -0.5645
6 G P 0.4052
7 F P 1.9949
1 F Q 1.9672
2 F Q 2.4660
3 G Q 0.0000
4 H Q 0.0000
5 K Q -0.4645
6 G Q 0.5574
7 F Q 2.1926
1 F R 2.6083
2 F R 2.9402
3 G R 1.2049
4 H R 0.0000
5 K R -0.4734
6 G R 0.5931
7 F R 2.7478
1 F S 3.1209
2 F S 3.3359
3 G S 1.0439
4 H S 0.0246
5 K S -0.8697
6 G S 0.2863
7 F S 2.7104
1 F T 2.5853
2 F T 2.9595
3 G T 0.5655
4 H T -0.4306
5 K T -1.2854
6 G T -0.0990
7 F T 1.9630
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Laboratory of Theory of Biopolymers 2018