| Chain sequence(s) |
A: FGKGHGF
C: FGKGHGF B: FGKGHGF E: FGKGHGF D: FGKGHGF G: FGKGHGF F: FGKGHGF I: FGKGHGF H: FGKGHGF K: FGKGHGF J: FGKGHGF M: FGKGHGF L: FGKGHGF O: FGKGHGF N: FGKGHGF Q: FGKGHGF P: FGKGHGF S: FGKGHGF R: FGKGHGF T: FGKGHGF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:15:23)
[INFO] Main: Simulation completed successfully. (00:15:28)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 1.6326 | |
| 2 | G | A | -0.3693 | |
| 3 | K | A | -1.6103 | |
| 4 | G | A | 0.0000 | |
| 5 | H | A | -1.1519 | |
| 6 | G | A | 0.0000 | |
| 7 | F | A | -0.1095 | |
| 1 | F | B | 1.4804 | |
| 2 | G | B | -0.8725 | |
| 3 | K | B | -1.7553 | |
| 4 | G | B | 0.0000 | |
| 5 | H | B | -1.0546 | |
| 6 | G | B | 0.0000 | |
| 7 | F | B | 0.4632 | |
| 1 | F | C | 0.2360 | |
| 2 | G | C | -0.8763 | |
| 3 | K | C | -1.2372 | |
| 4 | G | C | 0.0000 | |
| 5 | H | C | 0.9617 | |
| 6 | G | C | 0.0000 | |
| 7 | F | C | 0.9539 | |
| 1 | F | D | 3.1754 | |
| 2 | G | D | 0.7535 | |
| 3 | K | D | -0.4329 | |
| 4 | G | D | 0.0000 | |
| 5 | H | D | 0.0000 | |
| 6 | G | D | 0.0000 | |
| 7 | F | D | 2.1727 | |
| 1 | F | E | 4.1135 | |
| 2 | G | E | 1.4798 | |
| 3 | K | E | 0.0722 | |
| 4 | G | E | 0.0000 | |
| 5 | H | E | -0.2175 | |
| 6 | G | E | 0.0000 | |
| 7 | F | E | 0.0000 | |
| 1 | F | F | 4.1305 | |
| 2 | G | F | 0.0000 | |
| 3 | K | F | -0.7839 | |
| 4 | G | F | 0.0000 | |
| 5 | H | F | 0.3741 | |
| 6 | G | F | 0.0000 | |
| 7 | F | F | 0.0000 | |
| 1 | F | G | 4.0424 | |
| 2 | G | G | 0.0000 | |
| 3 | K | G | -1.1927 | |
| 4 | G | G | 0.0000 | |
| 5 | H | G | -0.7887 | |
| 6 | G | G | 0.0000 | |
| 7 | F | G | 2.2442 | |
| 1 | F | H | 4.5702 | |
| 2 | G | H | 0.0000 | |
| 3 | K | H | -0.1668 | |
| 4 | G | H | 0.0000 | |
| 5 | H | H | -1.1696 | |
| 6 | G | H | 0.0000 | |
| 7 | F | H | 2.1842 | |
| 1 | F | I | 3.9282 | |
| 2 | G | I | 1.6735 | |
| 3 | K | I | -1.0139 | |
| 4 | G | I | -1.3036 | |
| 5 | H | I | -1.6029 | |
| 6 | G | I | 0.0000 | |
| 7 | F | I | 1.9379 | |
| 1 | F | J | 1.6526 | |
| 2 | G | J | -0.0423 | |
| 3 | K | J | -0.7006 | |
| 4 | G | J | -0.7160 | |
| 5 | H | J | -0.6860 | |
| 6 | G | J | 0.0000 | |
| 7 | F | J | 1.2138 | |
| 1 | F | K | 1.2694 | |
| 2 | G | K | -0.5994 | |
| 3 | K | K | -1.7861 | |
| 4 | G | K | -1.2855 | |
| 5 | H | K | -1.2560 | |
| 6 | G | K | 0.0307 | |
| 7 | F | K | 0.0000 | |
| 1 | F | L | 1.0651 | |
| 2 | G | L | -1.1118 | |
| 3 | K | L | -1.8221 | |
| 4 | G | L | -1.2289 | |
| 5 | H | L | -0.7672 | |
| 6 | G | L | 0.0000 | |
| 7 | F | L | 0.0000 | |
| 1 | F | M | 1.2494 | |
| 2 | G | M | -0.7782 | |
| 3 | K | M | -1.8960 | |
| 4 | G | M | -1.3745 | |
| 5 | H | M | -0.5812 | |
| 6 | G | M | 0.0000 | |
| 7 | F | M | 1.6773 | |
| 1 | F | N | 2.1651 | |
| 2 | G | N | 0.1778 | |
| 3 | K | N | -0.7700 | |
| 4 | G | N | -1.2248 | |
| 5 | H | N | 0.0000 | |
| 6 | G | N | -0.0217 | |
| 7 | F | N | 0.0000 | |
| 1 | F | O | 2.6719 | |
| 2 | G | O | 0.7971 | |
| 3 | K | O | -0.3272 | |
| 4 | G | O | 0.0000 | |
| 5 | H | O | -0.6042 | |
| 6 | G | O | 0.0000 | |
| 7 | F | O | 1.5047 | |
| 1 | F | P | 2.6742 | |
| 2 | G | P | 0.0000 | |
| 3 | K | P | -0.6642 | |
| 4 | G | P | -0.8696 | |
| 5 | H | P | -0.3157 | |
| 6 | G | P | 0.0000 | |
| 7 | F | P | 0.0000 | |
| 1 | F | Q | 3.3119 | |
| 2 | G | Q | 0.8514 | |
| 3 | K | Q | -0.6657 | |
| 4 | G | Q | 0.0000 | |
| 5 | H | Q | -1.5390 | |
| 6 | G | Q | 0.0000 | |
| 7 | F | Q | 0.4729 | |
| 1 | F | R | 3.3028 | |
| 2 | G | R | 0.5789 | |
| 3 | K | R | -1.1449 | |
| 4 | G | R | -1.3953 | |
| 5 | H | R | -1.6333 | |
| 6 | G | R | 0.0000 | |
| 7 | F | R | 0.9373 | |
| 1 | F | S | 2.6449 | |
| 2 | G | S | 0.0000 | |
| 3 | K | S | -1.9678 | |
| 4 | G | S | 0.0000 | |
| 5 | H | S | -0.7800 | |
| 6 | G | S | 0.0000 | |
| 7 | F | S | 0.0000 | |
| 1 | F | T | 2.0974 | |
| 2 | G | T | -0.1841 | |
| 3 | K | T | -1.3431 | |
| 4 | G | T | -0.9905 | |
| 5 | H | T | -0.7098 | |
| 6 | G | T | 0.0000 | |
| 7 | F | T | 0.0000 |