Project name: Alextatug

Status: done

Started: 2026-03-23 04:29:52
Settings
Chain sequence(s) H: EVQLVESGGALVKPGGSLRLSCAASGFTFSKAWMSWVRQAPGKGLEWVGRIKSVTDGETTDYAAPVKGRFTISRDDSKSTLYLQMNSLKTEDTAVYYCTSSFCCRGGSCPSHDTSYCGGQYKSYYYMDVWGKGTTVTVSS
L: QSVLTQPPSASGTPGQRVTISCSGSSSNIGSSSVSWYQQLPGTAPKLLIYKNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCSTWDDSLSVRVFGGGTKLTVL
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:08)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:10)
Show buried residues

Minimal score value
-2.8258
Maximal score value
1.3938
Average score
-0.5889
Total score value
-147.2138

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.7012
2 V H -0.4669
3 Q H -1.1356
4 L H 0.0000
5 V H -0.0460
6 E H 0.0000
7 S H -0.5575
8 G H -0.6501
9 G H -0.1331
11 A H 0.6889
12 L H 1.2010
13 V H -0.2189
14 K H -1.8488
15 P H -2.0516
16 G H -1.5950
17 G H -1.3000
18 S H -1.2249
19 L H -0.7548
20 R H -1.5646
21 L H 0.0000
22 S H -0.3805
23 C H 0.0000
24 A H -0.3349
25 A H 0.0000
26 S H -0.8035
27 G H -0.8337
28 F H -0.4315
29 T H -0.5357
30 F H 0.0000
35 S H -0.7003
36 K H -1.3972
37 A H 0.0000
38 W H -0.0950
39 M H 0.0000
40 S H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.7617
45 A H -1.1796
46 P H -0.9642
47 G H -1.4582
48 K H -2.2418
49 G H -1.4761
50 L H 0.0000
51 E H -0.8856
52 W H 0.0000
53 V H 0.0000
54 G H 0.0000
55 R H -0.3854
56 I H 0.0000
57 K H -0.6644
58 S H 0.0000
59 V H 0.7363
60 T H -0.0895
61 D H -0.6608
62 G H -0.4455
63 E H -0.4891
64 T H -0.4970
65 T H -0.4750
66 D H -0.5757
67 Y H -0.5794
68 A H 0.0000
69 A H -0.4849
70 P H -0.9780
71 V H 0.0000
72 K H -1.8754
74 G H -1.4540
75 R H -1.3725
76 F H 0.0000
77 T H -0.8694
78 I H 0.0000
79 S H -0.4680
80 R H -0.6460
81 D H -1.2211
82 D H -1.3689
83 S H -1.4060
84 K H -2.1250
85 S H -1.3186
86 T H -0.8384
87 L H 0.0000
88 Y H -0.4001
89 L H 0.0000
90 Q H -1.1138
91 M H 0.0000
92 N H -1.3386
93 S H -1.4081
94 L H 0.0000
95 K H -2.8258
96 T H -2.0991
97 E H -2.4694
98 D H 0.0000
99 T H -0.7370
100 A H 0.0000
101 V H 0.0790
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 T H 0.0000
106 S H 0.0000
107 S H 0.0000
108 F H 0.3778
109 C H -0.1504
110 C H -0.5792
111 R H -2.2687
111A G H -1.4958
111B G H -1.3207
111C S H -0.6751
111D C H -0.2340
111E P H -0.8424
111F S H -1.2490
111G H H -1.8533
111H D H -2.1234
111I T H -0.8866
112I S H -0.1246
112H Y H 0.7946
112G C H 0.6936
112F G H -0.2337
112E G H -0.7772
112D Q H -1.6010
112C Y H -0.6962
112B K H -1.4648
112A S H -0.6394
112 Y H -0.1090
113 Y H 0.4231
114 Y H 0.0000
115 M H 0.0000
116 D H -0.0474
117 V H 0.0622
118 W H -0.4052
119 G H 0.0000
120 K H -1.6097
121 G H 0.0000
122 T H 0.0000
123 T H 0.0061
124 V H 0.0000
125 T H -0.1121
126 V H 0.0000
127 S H -0.9697
128 S H -0.7015
1 Q L -1.0538
2 S L -0.4767
3 V L 0.3709
4 L L 0.0000
5 T L -0.3549
6 Q L -0.4130
7 P L -0.5780
8 P L -0.7848
9 S L -0.7831
11 A L -0.5258
12 S L -0.3565
13 G L 0.0000
14 T L -0.3785
15 P L -1.1135
16 G L -1.8171
17 Q L -2.4403
18 R L -2.6116
19 V L 0.0000
20 T L -0.5764
21 I L 0.0000
22 S L -0.3737
23 C L 0.0000
24 S L -0.3696
25 G L -0.2019
26 S L -0.5107
27 S L -0.8415
28 S L -0.8604
29 N L 0.0000
30 I L 0.0000
35 G L -0.9619
36 S L -0.8532
37 S L -0.6216
38 S L -0.4789
39 V L 0.0000
40 S L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -0.6094
45 L L -0.4602
46 P L -0.4028
47 G L -0.4870
48 T L -0.6873
49 A L -0.7501
50 P L 0.0000
51 K L -1.0657
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.8380
56 K L -1.1236
57 N L -1.4924
65 N L -2.1862
66 Q L -2.0230
67 R L -2.0783
68 P L -0.8886
69 S L -0.7600
70 G L -0.9536
71 V L 0.0000
72 P L -1.4088
74 D L -2.2975
75 R L -1.6027
76 F L 0.0000
77 S L -1.3740
78 G L -1.2737
79 S L -1.1789
80 K L -1.2398
83 S L -0.8230
84 G L -0.8926
85 T L -0.7353
86 S L -0.7108
87 A L 0.0000
88 S L -0.6250
89 L L 0.0000
90 A L 0.0000
91 I L 0.0000
92 S L -1.8702
93 G L -1.8224
94 L L 0.0000
95 R L -2.1209
96 S L -1.5958
97 E L -2.3683
98 D L 0.0000
99 E L -1.4639
100 A L 0.0000
101 D L -0.9277
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 S L 0.0000
106 T L 0.0000
107 W L -0.1203
108 D L 0.0000
109 D L -1.6189
110 S L -0.5213
113 L L 0.6617
114 S L -0.0473
115 V L 0.2330
116 R L 0.0000
117 V L 0.0000
118 F L 0.0000
119 G L 0.0000
120 G L -1.1162
121 G L 0.0000
122 T L 0.0000
123 K L -1.2187
124 L L 0.0000
125 T L -0.1720
126 V L -0.0677
127 L L 1.3938
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018