Project name: 2_76_LepB_Aggrescan3D_10Armstrong_distance

Status: done

Started: 2026-05-07 20:23:02
Settings
Chain sequence(s) A: VRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPTSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQEGEWPTGVRLSRIGGIH
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:27)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:29)
Show buried residues

Minimal score value
-3.5453
Maximal score value
2.1726
Average score
-0.4937
Total score value
-115.0319

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 0.7015
2 R A -0.6511
3 S A 0.4743
4 F A 1.4884
5 I A 2.1726
6 Y A 1.2297
7 E A -0.1565
8 P A -0.2373
9 F A -0.3663
10 Q A -0.6068
11 I A 0.0000
12 P A -1.1862
13 S A -0.9948
14 G A -0.5966
15 S A -0.1859
16 M A 0.0000
17 M A -0.0138
18 P A 0.0000
19 T A 0.0000
20 L A 0.0000
21 L A -0.1509
22 I A -0.9423
23 G A 0.0000
24 D A 0.0000
25 F A 0.5709
26 I A 0.0000
27 L A 0.2085
28 V A 0.0000
29 E A 0.0190
30 K A 0.0774
31 F A 0.0000
32 A A 0.3785
33 Y A 0.0000
34 G A 0.0000
35 I A -0.3466
36 K A -1.3298
37 D A -0.5507
38 P A 0.2288
39 I A 1.6502
40 Y A 0.7742
41 Q A -1.3277
42 K A -1.6310
43 T A -0.9597
44 L A 0.3351
45 I A 1.3838
46 E A -0.0361
47 T A -0.3613
48 G A -0.9415
49 H A -1.6834
50 P A 0.0000
51 K A -1.8336
52 R A -1.1425
53 G A 0.0000
54 D A -0.9386
55 I A 0.0000
56 V A 0.0000
57 V A 0.0000
58 F A 0.0000
59 K A -1.9426
60 Y A -1.5847
61 P A -1.5874
62 E A -2.3296
63 D A -2.1785
64 P A -2.0837
65 K A -2.4016
66 L A -1.6213
67 D A -1.9779
68 Y A -0.6328
69 I A -0.1859
70 K A 0.0000
71 R A 0.0000
72 A A 0.0000
73 V A 0.0000
74 G A 0.0000
75 L A -0.4300
76 P A -0.4289
77 G A -0.5223
78 D A 0.0000
79 K A -0.4737
80 V A 0.0000
81 T A -0.4362
82 Y A 0.0000
83 D A -0.6294
84 P A -0.3390
85 V A 0.9633
86 S A 0.0511
87 K A -0.4995
88 E A -0.6485
89 L A 0.0000
90 T A -0.3332
91 I A 0.0000
92 Q A -0.8192
93 P A -0.5253
94 G A -0.7530
95 C A 0.0000
96 S A -0.8375
97 S A -0.9577
98 G A -1.2570
99 Q A -1.6638
100 A A -1.1508
101 C A -1.5652
102 E A -2.2737
103 N A -1.7018
104 A A -0.8533
105 L A -0.2760
106 P A -0.4309
107 V A -0.0646
108 T A -0.2033
109 Y A -0.4728
110 S A -1.0385
111 N A -1.1384
112 V A -0.0947
113 E A -1.6801
114 P A -1.1965
115 T A 0.0000
116 S A -0.7697
117 G A -0.4866
118 F A -0.1574
119 F A -0.5886
120 E A -0.9665
121 V A -1.6514
122 P A -1.9401
123 K A -2.7552
124 N A -2.7331
125 E A -3.5453
126 T A -2.9664
127 K A -3.2184
128 E A -3.4308
129 N A -3.0345
130 G A -2.1709
131 I A -0.4829
132 R A -1.3111
133 L A 0.0000
134 S A -0.5327
135 E A -1.2334
136 R A 0.0000
137 K A -1.9131
138 E A 0.0000
139 T A -0.7422
140 L A 0.0000
141 G A -0.8401
142 D A -1.6755
143 V A -0.7245
144 T A -0.9452
145 H A 0.0000
146 R A -1.7466
147 I A 0.0000
148 L A 0.0000
149 T A 0.0000
150 V A 0.0000
151 P A 0.4910
152 I A 1.5545
153 A A 0.2150
154 Q A -0.8227
155 D A -1.1263
156 Q A -1.2087
157 V A -0.2842
158 G A -0.1438
159 M A 0.6359
160 Y A 0.0000
161 Y A 0.2325
162 Q A -1.1222
163 Q A -0.9674
164 P A -0.9641
165 G A -1.1418
166 Q A -1.3090
167 Q A -1.3995
168 L A -0.2159
169 A A 0.0000
170 T A 0.0000
171 W A 0.0000
172 I A -0.2697
173 V A 0.0000
174 P A -0.3119
175 P A -0.5582
176 G A -0.7530
177 Q A -0.6034
178 Y A 0.0000
179 F A 0.0000
180 M A 0.0000
181 M A 0.0000
182 G A 0.0000
183 D A 0.0000
184 N A 0.0000
185 R A 0.0000
186 D A -0.7238
187 N A -0.8075
188 S A 0.0000
189 A A -0.0125
190 D A 0.0000
191 S A 0.0000
192 R A 0.0000
193 Y A 0.4236
194 W A 0.0000
195 G A 0.0000
196 F A 0.0882
197 V A 0.0000
198 P A -0.5803
199 E A -0.8802
200 A A -0.3577
201 N A -0.7066
202 L A -0.6346
203 V A -0.5908
204 G A 0.0000
205 R A -1.2043
206 A A 0.0000
207 T A -0.1193
208 A A 0.1107
209 I A 0.0000
210 W A 1.3848
211 M A 1.4135
212 S A 0.0000
213 F A 0.6843
214 D A -0.8161
215 K A -1.9058
216 Q A -2.9652
217 E A -3.1911
218 G A -2.3884
219 E A -2.6824
220 W A -0.5365
221 P A -0.5522
222 T A -0.3683
223 G A 0.4647
224 V A 1.6943
225 R A 1.0300
226 L A 1.9818
227 S A 0.7393
228 R A 0.6609
229 I A 1.4404
230 G A 0.2217
231 G A -0.4122
232 I A -0.4010
233 H A -1.2137
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Laboratory of Theory of Biopolymers 2018