Project name: SP34_scfv_2

Status: done

Started: 2026-06-14 13:56:27
Settings
Chain sequence(s) H: EVQLVESGGGLVQPGGSLKLSCAASGFTFNKYAMNWVRQAPGKGLEWVARIRSKYQNYATYYADSVKDRFTISRDDSKNTAYLQMNNLKTEDTAVYYCVRHGNFGNSYISYWAYWGQGTLVTVSS
L: QTVVTQEPSLTVSPGGTVTLTCGSSTGAVTSGYYPNWVQQKPGQAPRGLIGGTKFLAPGTPARFSGSLLGGKAALTLSGVQPEDEAEYYCALWYSNRWVFGGGTKLTVL
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:14)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:16)
Show buried residues

Minimal score value
-2.8792
Maximal score value
1.538
Average score
-0.422
Total score value
-98.7572

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.9640
2 V H -0.9140
3 Q H -0.7693
4 L H 0.0000
5 V H 1.0551
6 E H 0.0000
7 S H -0.1099
8 G H -0.6188
9 G H 0.1874
11 G H 0.8233
12 L H 1.4320
13 V H -0.0187
14 Q H -1.4705
15 P H -2.0044
16 G H -1.8692
17 G H -1.2955
18 S H -1.3883
19 L H -0.7888
20 K H -1.6446
21 L H 0.0000
22 S H -0.2040
23 C H 0.0000
24 A H -0.1123
25 A H 0.0000
26 S H -0.8477
27 G H -1.0672
28 F H -0.7532
29 T H -0.6252
30 F H 0.0000
35 N H -1.5385
36 K H -1.6403
37 Y H -0.8482
38 A H 0.0000
39 M H 0.0000
40 N H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.6528
45 A H -1.0597
46 P H -0.8282
47 G H -1.4585
48 K H -2.2700
49 G H -1.4779
50 L H 0.0000
51 E H -0.8804
52 W H 0.0000
53 V H 0.0000
54 A H 0.0000
55 R H -0.1873
56 I H 0.0000
57 R H -1.0957
58 S H 0.0000
59 K H -2.0836
60 Y H -0.3845
61 Q H -1.1568
62 N H -1.6652
63 Y H -0.9546
64 A H -0.5645
65 T H -0.1384
66 Y H -0.3505
67 Y H -1.0565
68 A H 0.0000
69 D H -2.4803
70 S H -1.7496
71 V H 0.0000
72 K H -2.5719
74 D H -2.8792
75 R H -2.2061
76 F H 0.0000
77 T H -0.8599
78 I H 0.0000
79 S H -0.2599
80 R H -1.0424
81 D H -1.5144
82 D H -2.0287
83 S H -1.6037
84 K H -2.3932
85 N H -1.8678
86 T H 0.0000
87 A H 0.0000
88 Y H -0.2340
89 L H 0.0000
90 Q H -0.9143
91 M H 0.0000
92 N H -1.9283
93 N H -2.4366
94 L H 0.0000
95 K H -2.5486
96 T H -1.8228
97 E H -2.2750
98 D H 0.0000
99 T H -0.4173
100 A H 0.0000
101 V H 0.7334
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 V H 0.0000
106 R H 0.0000
107 H H 0.0000
108 G H 0.0000
109 N H -1.0870
110 F H -0.0638
111 G H -0.7467
111A N H -1.1850
112B S H 0.0037
112A Y H 1.0914
112 I H 0.7652
113 S H 0.4498
114 Y H 0.0000
115 W H 0.0000
116 A H -0.0179
117 Y H 0.3811
118 W H 0.0925
119 G H 0.0000
120 Q H -0.9830
121 G H -0.0645
122 T H 0.5780
123 L H 1.5380
124 V H 0.0000
125 T H 0.3085
126 V H 0.0000
127 S H -0.7040
128 S H -0.5450
1 Q L -0.7962
2 T L 0.1765
3 V L 1.3912
4 V L 0.0000
5 T L 0.0207
6 Q L 0.0000
7 E L -0.7941
8 P L -0.8376
9 S L -0.6700
11 L L -0.0673
12 T L 0.3295
13 V L 0.3428
14 S L 0.1583
15 P L -0.6165
16 G L -0.9801
17 G L -0.6551
18 T L -0.4998
19 V L 0.0000
20 T L -0.0731
21 L L 0.0000
22 T L -0.0268
23 C L 0.0000
24 G L 0.0000
25 S L 0.1204
26 S L 0.0107
27 T L -0.2615
28 G L -0.6300
29 A L -0.2374
30 V L 0.0000
31 T L 0.0385
35 S L -0.2704
36 G L -0.1910
37 Y L 0.2419
38 Y L 0.4099
39 P L 0.0000
40 N L 0.0000
41 W L 0.0000
42 V L 0.0000
43 Q L 0.0000
44 Q L -1.2210
45 K L -1.6544
46 P L -1.2063
47 G L -1.4106
48 Q L -1.9994
49 A L -1.2745
50 P L 0.0000
51 R L -0.8449
52 G L 0.0000
53 L L 0.0000
54 I L 0.0000
55 G L 0.0000
56 G L 0.1206
57 T L 0.0000
65 K L -1.1063
66 F L 0.2379
67 L L 0.2852
68 A L 0.0000
69 P L -0.2619
70 G L -0.5963
71 T L -0.3481
72 P L -0.2245
74 A L -0.1606
75 R L -0.4920
76 F L 0.0000
77 S L -0.4668
78 G L 0.0000
79 S L 0.0684
80 L L 0.8451
83 L L 1.3760
84 G L 0.1668
85 G L -0.1028
86 K L -0.1308
87 A L 0.0000
88 A L 0.0000
89 L L 0.0000
90 T L -0.2267
91 L L 0.0000
92 S L -0.6415
93 G L -0.8321
94 V L 0.0000
95 Q L -1.4681
96 P L -1.1723
97 E L -1.8268
98 D L 0.0000
99 E L -1.2803
100 A L 0.0000
101 E L -0.9390
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 A L 0.0000
106 L L 0.0000
107 W L 0.0079
108 Y L 0.0000
109 S L -0.8009
114 N L -1.2659
115 R L -0.9652
116 W L 0.0000
117 V L 0.3825
118 F L 0.0000
119 G L 0.0000
120 G L -0.8082
121 G L 0.0000
122 T L 0.0000
123 K L -1.2098
124 L L 0.0000
125 T L 0.0744
126 V L 0.3538
127 L L 1.3779
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Laboratory of Theory of Biopolymers 2018