Project name: query_structure

Status: done

Started: 2026-03-16 23:01:53
Settings
Chain sequence(s) A: CSCKDKVCYNGIPCAESCVYLPCVTIVIG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:11)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:11)
Show buried residues

Minimal score value
-2.999
Maximal score value
3.7152
Average score
0.9652
Total score value
27.9908

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 C A 1.0917
2 S A -0.1545
3 C A -0.7943
4 K A -2.5402
5 D A -2.9990
6 K A -2.3217
7 V A -0.2098
8 C A 0.0000
9 Y A 1.2094
10 N A -0.3857
11 G A -0.1584
12 I A 0.4580
13 P A -0.3414
14 C A 0.2705
15 A A 0.1388
16 E A -0.4417
17 S A 0.9691
18 C A 2.0381
19 V A 2.5795
20 Y A 2.6876
21 L A 3.0047
22 P A 2.3372
23 C A 3.1802
24 V A 3.2900
25 T A 2.7997
26 I A 3.4879
27 V A 3.7152
28 I A 3.4366
29 G A 1.6433
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Laboratory of Theory of Biopolymers 2018