Project name: 4ee1d67024e9e82

Status: done

Started: 2025-06-03 05:18:54
Settings
Chain sequence(s) H: QVQLVQSGAEVVKPGASVKISCKASGYTFTGYFMNWVKQSPGQSLEWIGRIHPYDGDTFYNQKFQGKATLTVDKSSNTAHMELLSLTSEDFAVYYCTRYDGSRAMDYWGQGTTVTVSS
L: DIVLTQSPLSLAVSLGQPAIISCKASQSVSFAGTSLMHWYHQKPGQQPRLLIYRASNLEAGVPDRFSGSGSKTDFTLTISPVEAEDAATYYCQQSREYPYTFGGGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:35)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:37)
Show buried residues

Minimal score value
-2.8151
Maximal score value
1.4764
Average score
-0.465
Total score value
-106.4819

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.3785
2 V H -0.5293
3 Q H -0.5883
4 L H 0.0000
5 V H 0.6590
6 Q H 0.0000
7 S H -0.5300
8 G H -0.3021
9 A H 0.1331
11 E H 0.2784
12 V H 1.4764
13 V H 0.1942
14 K H -1.6070
15 P H -1.5387
16 G H -1.0384
17 A H -0.7444
18 S H -0.8157
19 V H -0.7759
20 K H -1.9608
21 I H 0.0000
22 S H -0.6814
23 C H 0.0000
24 K H -0.9013
25 A H 0.0000
26 S H -0.7686
27 G H -0.9414
28 Y H -0.4037
29 T H -0.2222
30 F H 0.0000
35 T H -0.1294
36 G H -0.0283
37 Y H 0.3909
38 F H 0.3336
39 M H 0.0000
40 N H 0.0000
41 W H 0.0000
42 V H 0.0000
43 K H 0.0000
44 Q H -0.4431
45 S H -0.6791
46 P H -0.5876
47 G H -1.1372
48 Q H -1.6151
49 S H -1.0969
50 L H 0.0000
51 E H -1.2324
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 R H 0.0000
56 I H 0.0000
57 H H -0.4381
58 P H 0.0000
59 Y H 0.0272
62 D H -1.6957
63 G H -1.5105
64 D H -1.8165
65 T H -0.6910
66 F H 0.1523
67 Y H -0.5559
68 N H -1.3911
69 Q H -2.4671
70 K H -2.8151
71 F H 0.0000
72 Q H -2.2737
74 G H -1.5304
75 K H -1.2680
76 A H 0.0000
77 T H -0.7562
78 L H 0.0000
79 T H -0.8474
80 V H -0.8479
81 D H -1.5459
82 K H -1.5982
83 S H -1.1152
84 S H -1.1027
85 N H -1.5038
86 T H 0.0000
87 A H 0.0000
88 H H -1.0560
89 M H 0.0000
90 E H -1.3488
91 L H 0.0000
92 L H -0.3563
93 S H -0.5797
94 L H 0.0000
95 T H -0.9783
96 S H -1.0326
97 E H -1.5293
98 D H 0.0000
99 F H 0.9594
100 A H 0.0000
101 V H 0.5544
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 T H 0.0000
106 R H 0.0000
107 Y H 0.0108
108 D H -0.4123
109 G H -0.6698
110 S H -0.6692
113 R H -0.9427
114 A H 0.0000
115 M H 0.0000
116 D H -0.1700
117 Y H 0.2985
118 W H 0.0000
119 G H 0.0000
120 Q H -0.7708
121 G H -0.4392
122 T H 0.0000
123 T H 0.4294
124 V H 0.0000
125 T H 0.6244
126 V H 0.0000
127 S H -0.4079
128 S H -0.6824
1 D L -1.5388
2 I L 0.0000
3 V L 0.7749
4 L L 0.0000
5 T L -0.3933
6 Q L 0.0000
7 S L 0.1228
8 P L 0.5599
9 L L 1.0328
10 S L -0.0417
11 L L 0.1987
12 A L -0.7196
13 V L -0.5174
14 S L -0.9122
15 L L -0.2228
16 G L -0.8962
17 Q L -1.3574
18 P L -0.5074
19 A L 0.0000
20 I L 1.4275
21 I L 0.0000
22 S L -0.3535
23 C L 0.0000
24 K L -2.3959
25 A L 0.0000
26 S L -0.9411
27 Q L -1.4945
28 S L -1.2771
29 V L 0.0000
30 S L -0.1760
31 F L 1.4264
34 A L 0.7544
35 G L -0.1921
36 T L -0.0897
37 S L 0.0000
38 L L 0.0000
39 M L 0.0000
40 H L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 H L 0.0000
44 Q L -1.1113
45 K L -1.4768
46 P L -1.0016
47 G L -1.2863
48 Q L -1.7914
49 Q L -1.3706
50 P L 0.0000
51 R L -1.0721
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.4750
56 R L -0.9358
57 A L 0.0000
65 S L -0.7723
66 N L -0.6597
67 L L -0.3317
68 E L -0.5093
69 A L -0.2500
70 G L -0.6641
71 V L 0.0000
72 P L -1.0201
74 D L -1.8759
75 R L 0.0000
76 F L 0.0000
77 S L -0.5274
78 G L -0.3311
79 S L -0.8999
80 G L -1.5761
83 S L -2.0070
84 K L -2.3978
85 T L 0.0000
86 D L -2.7033
87 F L 0.0000
88 T L -0.4718
89 L L 0.0000
90 T L 0.3826
91 I L 0.0000
92 S L -0.7400
93 P L -1.0320
94 V L 0.0000
95 E L -1.3473
96 A L -1.2910
97 E L -2.0021
98 D L 0.0000
99 A L -1.1698
100 A L 0.0000
101 T L -0.6955
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 S L 0.0000
108 R L -0.5034
109 E L -0.8110
114 Y L 0.0915
115 P L -0.5790
116 Y L 0.0000
117 T L -0.2350
118 F L 0.0000
119 G L 0.0000
120 G L -0.3271
121 G L 0.0000
122 T L 0.0000
123 K L -1.0713
124 L L 0.0000
125 E L -1.4640
126 I L -0.9201
127 K L -1.5492
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Laboratory of Theory of Biopolymers 2018