Project name: query_structure

Status: done

Started: 2026-03-16 23:17:53
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Chain sequence(s) A: EVQVVESGGGLVQPGGSLRLSCAASGTGSFSTYAMGWYRQAPGNQHERVAIIDSVGNTNYPDSVKGRFTISRDNAKNTGYLQMNSLKSEDTAVYYCNLGTIWGQGTQVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:51)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:52)
Show buried residues

Minimal score value
-2.8184
Maximal score value
1.1507
Average score
-0.7771
Total score value
-87.0337

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E A -1.9487
2 V A -0.8828
3 Q A -0.7311
4 V A 0.0000
5 V A 0.9242
6 E A 0.0000
7 S A -0.5350
8 G A -1.0517
9 G A -0.7924
10 G A -0.0547
11 L A 1.0121
12 V A -0.0281
13 Q A -1.3438
14 P A -1.6645
15 G A -1.4693
16 G A -1.0140
17 S A -1.4213
18 L A -1.0693
19 R A -2.3003
20 L A 0.0000
21 S A -0.4910
22 C A 0.0000
23 A A -0.2039
24 A A -0.2850
25 S A -0.6340
26 G A -1.0582
27 T A -0.6192
28 G A 0.0000
29 S A -0.4844
30 F A 0.0000
31 S A -0.3228
32 T A 0.2694
33 Y A 0.8245
34 A A 0.1648
35 M A 0.0000
36 G A 0.0000
37 W A 0.0000
38 Y A -0.8538
39 R A -1.3248
40 Q A -1.7333
41 A A -1.5942
42 P A -1.0384
43 G A -1.5887
44 N A -2.5177
45 Q A -2.6954
46 H A -2.2812
47 E A -2.1934
48 R A -2.0292
49 V A 0.0000
50 A A 0.0000
51 I A -0.6606
52 I A 0.0000
53 D A -0.4972
54 S A 0.2144
55 V A 1.1507
56 G A -0.4738
57 N A -1.3537
58 T A -1.1491
59 N A -2.0261
60 Y A -1.6577
61 P A -1.9405
62 D A -2.6578
63 S A -1.8895
64 V A 0.0000
65 K A -2.8184
66 G A -1.8551
67 R A -1.8504
68 F A 0.0000
69 T A -1.1475
70 I A 0.0000
71 S A -0.7952
72 R A -1.3891
73 D A -1.8325
74 N A -2.3055
75 A A -1.6865
76 K A -2.4177
77 N A -1.9100
78 T A -1.1317
79 G A 0.0000
80 Y A -0.6975
81 L A 0.0000
82 Q A -1.6075
83 M A 0.0000
84 N A -1.9222
85 S A -1.3929
86 L A 0.0000
87 K A -2.4066
88 S A -1.9582
89 E A -2.3492
90 D A 0.0000
91 T A -0.9007
92 A A 0.0000
93 V A -0.3377
94 Y A 0.0000
95 Y A -0.2536
96 C A 0.0000
97 N A 0.1871
98 L A 0.0000
99 G A 0.1255
100 T A 0.2344
101 I A 0.4594
102 W A 0.6571
103 G A 0.1011
104 Q A -0.7457
105 G A 0.0000
106 T A -0.6863
107 Q A -0.9588
108 V A 0.0000
109 T A -0.2722
110 V A 0.0000
111 S A -0.6640
112 S A -0.5041
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Laboratory of Theory of Biopolymers 2018