Project name: LVS

Status: done

Started: 2025-06-25 14:05:54
Settings
Chain sequence(s) H: EVQLLESGGGLVQPGGSLRLSCAASGYTNRLKCMGWFRQAPGKERELVSISTGTGNTYYADSVKGRFTISRDNSKNTLYLQMNSLKAEDTAVYYCAADVRPDGTTCHYNSRGQGTLVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:35)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:35)
Show buried residues

Minimal score value
-3.0191
Maximal score value
1.6991
Average score
-0.859
Total score value
-103.9441

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.9887
2 V H -1.4975
3 Q H -1.6658
4 L H 0.0000
5 L H 0.3735
6 E H 0.0000
7 S H -0.3059
8 G H -0.8411
9 G H 0.0760
11 G H 0.7687
12 L H 1.5422
13 V H 0.0574
14 Q H -1.3464
15 P H -1.8317
16 G H -1.4761
17 G H -0.9270
18 S H -1.2363
19 L H -0.8875
20 R H -2.0935
21 L H 0.0000
22 S H 0.0000
23 C H 0.0000
24 A H -0.4025
25 A H 0.0000
26 S H -1.1023
27 G H -1.1326
28 Y H -1.0191
29 T H -1.2171
30 N H -2.3141
35 R H -2.6940
36 L H -1.5691
37 K H -1.5154
38 C H -0.7069
39 M H 0.0000
40 G H 0.0000
41 W H 0.0000
42 F H -0.2756
43 R H 0.0000
44 Q H -1.1615
45 A H -1.1465
46 P H -1.0319
47 G H -1.5933
48 K H -2.5603
49 E H -3.0191
50 R H -2.1554
51 E H -1.4559
53 L H 0.0024
54 V H 0.0000
55 S H 0.0000
56 I H 0.4413
57 S H 0.0000
58 T H -0.7497
59 G H -1.4971
62 T H -0.9766
63 G H -1.3165
64 N H -1.3715
65 T H -0.2408
66 Y H 0.4846
67 Y H -0.3608
68 A H -0.9703
69 D H -2.3790
70 S H -1.8373
71 V H 0.0000
72 K H -2.4999
74 G H -1.7975
75 R H -1.8462
76 F H 0.0000
77 T H -0.7452
78 I H 0.0000
79 S H -0.5992
80 R H -1.5193
81 D H -2.1596
82 N H -2.6618
83 S H -2.0875
84 K H -2.8606
85 N H -2.3902
86 T H -1.3794
87 L H 0.0000
88 Y H -0.5298
89 L H 0.0000
90 Q H -1.3104
91 M H 0.0000
92 N H -1.4457
93 S H -1.3677
94 L H 0.0000
95 K H -2.6296
96 A H -1.8879
97 E H -2.3418
98 D H 0.0000
99 T H -0.3908
100 A H 0.0000
101 V H 0.8473
102 Y H 0.0000
103 Y H -0.2022
104 C H 0.0000
105 A H 0.0000
106 A H 0.0000
107 D H 0.0000
108 V H -1.4286
109 R H -2.6919
110 P H -1.9780
111 D H -2.4276
111A G H -1.5289
112A T H -1.0881
112 T H -0.7413
113 C H -0.3044
114 H H -0.8142
115 Y H -0.9179
116 N H -1.6636
117 S H 0.0000
118 R H -2.0511
119 G H 0.0000
120 Q H -1.2500
121 G H -0.1904
122 T H 0.6071
123 L H 1.6991
124 V H 0.0000
125 T H 0.3623
126 V H 0.0000
127 S H -0.6895
128 S H -0.9185
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Laboratory of Theory of Biopolymers 2018