| Chain sequence(s) |
A: VQLVESGGGSVQAGGSLRLSCTASGFTFDDFDMGWYHQAPGNECELVSTISNAGHTYYADSVKGRFAISRDNAKNMVYLQMNNLKPEDTAMYYCAAVGALLGFPLVLARPRGGYNYWGQGTMVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:11)
[INFO] Main: Simulation completed successfully. (00:01:12)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | V | A | 0.9313 | |
| 2 | Q | A | -0.3269 | |
| 3 | L | A | 0.0000 | |
| 4 | V | A | 0.1598 | |
| 5 | E | A | 0.0000 | |
| 6 | S | A | -0.5492 | |
| 7 | G | A | -0.9812 | |
| 8 | G | A | -0.6326 | |
| 9 | G | A | -0.4863 | |
| 10 | S | A | -0.4903 | |
| 11 | V | A | -0.8215 | |
| 12 | Q | A | -1.7687 | |
| 13 | A | A | -1.8863 | |
| 14 | G | A | -1.7968 | |
| 15 | G | A | -1.3733 | |
| 16 | S | A | -1.4644 | |
| 17 | L | A | -1.2569 | |
| 18 | R | A | -2.1254 | |
| 19 | L | A | 0.0000 | |
| 20 | S | A | -0.5097 | |
| 21 | C | A | 0.0000 | |
| 22 | T | A | -0.4493 | |
| 23 | A | A | 0.0000 | |
| 24 | S | A | -0.1827 | |
| 25 | G | A | 0.0640 | |
| 26 | F | A | -0.1886 | |
| 27 | T | A | -1.0235 | |
| 28 | F | A | 0.0000 | |
| 29 | D | A | -2.9190 | |
| 30 | D | A | -2.3761 | |
| 31 | F | A | -1.0473 | |
| 32 | D | A | 0.0000 | |
| 33 | M | A | 0.0000 | |
| 34 | G | A | 0.0000 | |
| 35 | W | A | 0.0000 | |
| 36 | Y | A | 0.0000 | |
| 37 | H | A | -1.0177 | |
| 38 | Q | A | -1.6328 | |
| 39 | A | A | -1.6618 | |
| 40 | P | A | -1.1912 | |
| 41 | G | A | -1.6545 | |
| 42 | N | A | -2.7885 | |
| 43 | E | A | -3.0897 | |
| 44 | C | A | -2.3662 | |
| 45 | E | A | -2.5974 | |
| 46 | L | A | -1.1246 | |
| 47 | V | A | 0.0000 | |
| 48 | S | A | 0.0000 | |
| 49 | T | A | 0.0000 | |
| 50 | I | A | 0.0000 | |
| 51 | S | A | 0.0000 | |
| 52 | N | A | -1.8001 | |
| 53 | A | A | -1.0776 | |
| 54 | G | A | -0.9957 | |
| 55 | H | A | -1.1086 | |
| 56 | T | A | -0.2054 | |
| 57 | Y | A | 0.4268 | |
| 58 | Y | A | -0.3881 | |
| 59 | A | A | -1.2785 | |
| 60 | D | A | -2.3422 | |
| 61 | S | A | -1.8018 | |
| 62 | V | A | 0.0000 | |
| 63 | K | A | -2.4833 | |
| 64 | G | A | -1.8724 | |
| 65 | R | A | -1.7233 | |
| 66 | F | A | 0.0000 | |
| 67 | A | A | -0.6843 | |
| 68 | I | A | 0.0000 | |
| 69 | S | A | -0.5836 | |
| 70 | R | A | -1.2382 | |
| 71 | D | A | -1.6876 | |
| 72 | N | A | -2.1801 | |
| 73 | A | A | -1.6276 | |
| 74 | K | A | -2.2997 | |
| 75 | N | A | -2.0514 | |
| 76 | M | A | -0.9951 | |
| 77 | V | A | 0.0000 | |
| 78 | Y | A | -0.5792 | |
| 79 | L | A | 0.0000 | |
| 80 | Q | A | -1.2180 | |
| 81 | M | A | 0.0000 | |
| 82 | N | A | -1.8349 | |
| 83 | N | A | -2.2561 | |
| 84 | L | A | 0.0000 | |
| 85 | K | A | -2.5869 | |
| 86 | P | A | -1.8799 | |
| 87 | E | A | -2.3171 | |
| 88 | D | A | 0.0000 | |
| 89 | T | A | -0.8949 | |
| 90 | A | A | 0.0000 | |
| 91 | M | A | 0.0826 | |
| 92 | Y | A | 0.0000 | |
| 93 | Y | A | -0.1128 | |
| 94 | C | A | 0.0000 | |
| 95 | A | A | 0.0000 | |
| 96 | A | A | 0.0000 | |
| 97 | V | A | 0.0000 | |
| 98 | G | A | -0.1194 | |
| 99 | A | A | 0.4866 | |
| 100 | L | A | 2.0254 | |
| 101 | L | A | 2.4670 | |
| 102 | G | A | 1.4616 | |
| 103 | F | A | 2.3650 | |
| 104 | P | A | 1.8783 | |
| 105 | L | A | 2.5849 | |
| 106 | V | A | 2.1346 | |
| 107 | L | A | 2.1032 | |
| 108 | A | A | -0.0087 | |
| 109 | R | A | -2.2332 | |
| 110 | P | A | -2.5146 | |
| 111 | R | A | -3.0966 | |
| 112 | G | A | -2.0006 | |
| 113 | G | A | -0.8727 | |
| 114 | Y | A | -0.9033 | |
| 115 | N | A | -1.1401 | |
| 116 | Y | A | -0.0591 | |
| 117 | W | A | -0.0097 | |
| 118 | G | A | -0.2473 | |
| 119 | Q | A | -1.0866 | |
| 120 | G | A | 0.0000 | |
| 121 | T | A | -0.0383 | |
| 122 | M | A | 0.3026 | |
| 123 | V | A | 0.0000 | |
| 124 | T | A | -0.5945 | |
| 125 | V | A | 0.0000 | |
| 126 | S | A | -1.2144 | |
| 127 | S | A | -0.8867 |