Project name: query_structure

Status: done

Started: 2026-03-17 01:07:45
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Chain sequence(s) A: VQLVESGGGSVQAGGSLRLSCTASGFTFDDFDMGWYHQAPGNECELVSTISNAGHTYYADSVKGRFAISRDNAKNMVYLQMNNLKPEDTAMYYCAAVGALLGFPLVLARPRGGYNYWGQGTMVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:11)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:12)
Show buried residues

Minimal score value
-3.0966
Maximal score value
2.5849
Average score
-0.6727
Total score value
-85.4369

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 0.9313
2 Q A -0.3269
3 L A 0.0000
4 V A 0.1598
5 E A 0.0000
6 S A -0.5492
7 G A -0.9812
8 G A -0.6326
9 G A -0.4863
10 S A -0.4903
11 V A -0.8215
12 Q A -1.7687
13 A A -1.8863
14 G A -1.7968
15 G A -1.3733
16 S A -1.4644
17 L A -1.2569
18 R A -2.1254
19 L A 0.0000
20 S A -0.5097
21 C A 0.0000
22 T A -0.4493
23 A A 0.0000
24 S A -0.1827
25 G A 0.0640
26 F A -0.1886
27 T A -1.0235
28 F A 0.0000
29 D A -2.9190
30 D A -2.3761
31 F A -1.0473
32 D A 0.0000
33 M A 0.0000
34 G A 0.0000
35 W A 0.0000
36 Y A 0.0000
37 H A -1.0177
38 Q A -1.6328
39 A A -1.6618
40 P A -1.1912
41 G A -1.6545
42 N A -2.7885
43 E A -3.0897
44 C A -2.3662
45 E A -2.5974
46 L A -1.1246
47 V A 0.0000
48 S A 0.0000
49 T A 0.0000
50 I A 0.0000
51 S A 0.0000
52 N A -1.8001
53 A A -1.0776
54 G A -0.9957
55 H A -1.1086
56 T A -0.2054
57 Y A 0.4268
58 Y A -0.3881
59 A A -1.2785
60 D A -2.3422
61 S A -1.8018
62 V A 0.0000
63 K A -2.4833
64 G A -1.8724
65 R A -1.7233
66 F A 0.0000
67 A A -0.6843
68 I A 0.0000
69 S A -0.5836
70 R A -1.2382
71 D A -1.6876
72 N A -2.1801
73 A A -1.6276
74 K A -2.2997
75 N A -2.0514
76 M A -0.9951
77 V A 0.0000
78 Y A -0.5792
79 L A 0.0000
80 Q A -1.2180
81 M A 0.0000
82 N A -1.8349
83 N A -2.2561
84 L A 0.0000
85 K A -2.5869
86 P A -1.8799
87 E A -2.3171
88 D A 0.0000
89 T A -0.8949
90 A A 0.0000
91 M A 0.0826
92 Y A 0.0000
93 Y A -0.1128
94 C A 0.0000
95 A A 0.0000
96 A A 0.0000
97 V A 0.0000
98 G A -0.1194
99 A A 0.4866
100 L A 2.0254
101 L A 2.4670
102 G A 1.4616
103 F A 2.3650
104 P A 1.8783
105 L A 2.5849
106 V A 2.1346
107 L A 2.1032
108 A A -0.0087
109 R A -2.2332
110 P A -2.5146
111 R A -3.0966
112 G A -2.0006
113 G A -0.8727
114 Y A -0.9033
115 N A -1.1401
116 Y A -0.0591
117 W A -0.0097
118 G A -0.2473
119 Q A -1.0866
120 G A 0.0000
121 T A -0.0383
122 M A 0.3026
123 V A 0.0000
124 T A -0.5945
125 V A 0.0000
126 S A -1.2144
127 S A -0.8867
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Laboratory of Theory of Biopolymers 2018