Project name: ECD_970_1st

Status: done

Started: 2024-06-19 14:49:09
Settings
Chain sequence(s) A: NFTLPPNFGKRPTDLELSVKLVEMLKNIMLLSGCTLEKSKIKEVLDKPKVIDLALEAQFTIMPKTALELAKVFRLKNIEALAILVCGCSPTGNLSNVFSMKVKGDLNLSWVMTTCSTRCAREHMADLLTEYSRGIYDGDLKDKVPYKGIEISLKLVEKPCTEGIELKSKRPQLLRELKKKLEEKVEELSKEVTELSKENVGKSIMFAMTPKILKTSSEMPRRGIEEGYKISEEACLNGRCRRTVSMETGCRNVQLCSTILNVAFPPEVIGPLFFFPLLYMENQLKEGEKLVKELKEEEKKLE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:07:32)
[INFO]       Main:     Simulation completed successfully.                                          (00:07:33)
Show buried residues

Minimal score value
-5.5971
Maximal score value
2.2746
Average score
-1.2127
Total score value
-366.2224

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -0.2754
2 F A 1.4047
3 T A 0.7010
4 L A 0.0981
5 P A -0.4150
6 P A -1.0769
7 N A -2.2351
8 F A 0.0000
9 G A -1.4152
10 K A -2.3335
11 R A -1.5424
12 P A -0.8491
13 T A -0.7090
14 D A -0.6786
15 L A 0.8162
16 E A -0.4430
17 L A 0.0000
18 S A 1.0139
19 V A 1.4687
20 K A -0.3354
21 L A 0.0000
22 V A 0.2323
23 E A -0.6257
24 M A -0.8536
25 L A 0.0000
26 K A -1.2846
27 N A 0.0000
28 I A -0.4245
29 M A 0.0000
30 L A -0.5674
31 L A -0.7772
32 S A 0.0383
33 G A 0.0000
34 C A 0.0000
35 T A -0.2177
36 L A 0.0000
37 E A -2.1770
38 K A -2.9785
39 S A -2.4943
40 K A -2.5260
41 I A -2.3328
42 K A -3.5290
43 E A -3.5821
44 V A 0.0000
45 L A -1.8746
46 D A -3.0525
47 K A -2.8118
48 P A -2.2148
49 K A -2.7393
50 V A 0.0000
51 I A 0.0000
52 D A -2.8488
53 L A -1.6039
54 A A 0.0000
55 L A -1.2668
56 E A -1.9989
57 A A 0.0000
58 Q A 0.0000
59 F A -0.6306
60 T A -0.8712
61 I A 0.0000
62 M A 0.0000
63 P A 0.0000
64 K A -2.0312
65 T A 0.0000
66 A A 0.0000
67 L A -1.1352
68 E A -2.0198
69 L A 0.0000
70 A A 0.0000
71 K A -1.6047
72 V A 0.3031
73 F A -0.9469
74 R A -2.3560
75 L A -1.7950
76 K A -2.5245
77 N A -1.9451
78 I A -0.4129
79 E A 0.0000
80 A A 0.0000
81 L A 0.0000
82 A A 0.0000
83 I A 0.0000
84 L A 0.0000
85 V A 0.0000
86 C A 0.0000
87 G A 0.0000
88 C A 0.0000
89 S A 0.0000
90 P A 0.0000
91 T A 0.0000
92 G A 0.0000
93 N A 0.1029
94 L A 0.5535
95 S A 0.0000
96 N A 0.0000
97 V A 1.0473
98 F A 0.0000
99 S A 0.0000
100 M A -0.1201
101 K A -1.4716
102 V A 0.0000
103 K A -1.9531
104 G A 0.0000
105 D A -1.4110
106 L A -0.3390
107 N A -0.8503
108 L A 0.0000
109 S A 0.0000
110 W A -0.1290
111 V A 0.0000
112 M A 0.0000
113 T A -0.0993
114 T A -0.2925
115 C A -0.4963
116 S A 0.0000
117 T A -1.3747
118 R A -2.4461
119 C A -1.6993
120 A A 0.0000
121 R A -3.4790
122 E A -3.6290
123 H A -2.9648
124 M A 0.0000
125 A A -2.1017
126 D A -2.6062
127 L A -1.6272
128 L A 0.0000
129 T A -2.3850
130 E A -2.6204
131 Y A 0.0000
132 S A 0.0000
133 R A -3.0209
134 G A -1.8587
135 I A -1.2463
136 Y A -1.9041
137 D A -2.7163
138 G A -2.6634
139 D A -3.5676
140 L A 0.0000
141 K A -3.3051
142 D A -3.2249
143 K A -2.2720
144 V A 0.0000
145 P A -1.1937
146 Y A -1.2973
147 K A -1.6287
148 G A -0.5789
149 I A 0.0000
150 E A -2.2083
151 I A -0.4014
152 S A 0.0000
153 L A 0.0000
154 K A -2.3157
155 L A -1.1609
156 V A 0.0000
157 E A -2.5186
158 K A -2.8102
159 P A -1.9641
160 C A -1.4382
161 T A -1.8856
162 E A -2.7403
163 G A 0.0000
164 I A -1.8229
165 E A -3.1791
166 L A -2.1530
167 K A -2.3662
168 S A -2.6117
169 K A -2.9674
170 R A -2.7179
171 P A -2.1223
172 Q A -2.0877
173 L A -1.2518
174 L A 0.0000
175 R A -3.4818
176 E A -3.6621
177 L A -2.8093
178 K A -3.6229
179 K A -4.9891
180 K A -4.8675
181 L A 0.0000
182 E A -4.7649
183 E A -5.1804
184 K A -4.3224
185 V A -3.7261
186 E A -4.6915
187 E A -4.5005
188 L A 0.0000
189 S A -3.0624
190 K A -3.9153
191 E A -3.8405
192 V A 0.0000
193 T A -2.6148
194 E A -3.7628
195 L A -2.9057
196 S A -2.3227
197 K A -3.5784
198 E A -3.3908
199 N A 0.0000
200 V A 0.0000
201 G A -2.1278
202 K A -1.4890
203 S A 0.4514
204 I A 0.9341
205 M A 1.4655
206 F A 2.2746
207 A A 0.0000
208 M A 1.0249
209 T A 0.3720
210 P A -0.4406
211 K A -1.2167
212 I A 0.0000
213 L A -0.0923
214 K A -1.1645
215 T A 0.0000
216 S A 0.0000
217 S A -1.1802
218 E A -1.0354
219 M A 0.0000
220 P A 0.0000
221 R A -2.3408
222 R A -2.3043
223 G A 0.0000
224 I A 0.0000
225 E A -3.1035
226 E A -3.0113
227 G A 0.0000
228 Y A -2.2171
229 K A -3.0229
230 I A -1.9576
231 S A 0.0000
232 E A -3.1011
233 E A -2.5753
234 A A -1.4054
235 C A -0.8292
236 L A -1.2494
237 N A -2.0864
238 G A -2.1207
239 R A -2.7808
240 C A 0.0000
241 R A -2.0659
242 R A -1.8734
243 T A 0.0000
244 V A 0.0000
245 S A 0.0000
246 M A 0.0000
247 E A 0.0000
248 T A 0.0000
249 G A 0.0000
250 C A 0.0000
251 R A 0.0000
252 N A 0.0000
253 V A 0.0000
254 Q A -0.1199
255 L A 0.0000
256 C A 0.0000
257 S A 0.0000
258 T A 0.0000
259 I A 0.0000
260 L A 0.0000
261 N A 0.6673
262 V A 1.9788
263 A A 0.4094
264 F A 0.0000
265 P A 0.0251
266 P A -0.4626
267 E A -1.1200
268 V A 0.8763
269 I A 0.0000
270 G A 0.0000
271 P A 0.0000
272 L A 0.0000
273 F A 0.0000
274 F A 0.0000
275 F A 0.0000
276 P A 0.0000
277 L A 0.2962
278 L A 0.0069
279 Y A 0.0000
280 M A -0.5478
281 E A -1.8737
282 N A -1.7585
283 Q A 0.0000
284 L A -1.6812
285 K A -3.1955
286 E A -2.6306
287 G A 0.0000
288 E A -3.7981
289 K A -3.6736
290 L A -2.9737
291 V A -3.3409
292 K A -4.7778
293 E A -4.7481
294 L A -4.0765
295 K A -5.1666
296 E A -5.5971
297 E A -5.4303
298 E A -4.9699
299 K A -4.8344
300 K A -4.0205
301 L A -1.8013
302 E A -2.7225
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Laboratory of Theory of Biopolymers 2018