| Chain sequence(s) |
H: QVQLVQSGAEVKKPGASVKVSCKASGYTFTNYWMQWVRQAPGQGLEWIGEIDPSDSYTDYNQKFQGRVTLTRDTSTSTVYMELSSLRSEDTAVYYCARTYGRGYYFDYWGQGTLVTVSS
L: EIVLTQSPDFQSVTPKEKVTITCSASSSVSYMHWYQQKPDQSPKRWIYDTSKLASGVPSRFSGSGSGTDFTLTINSLEAEDAATYYCQQWSSSPWTFGGGTKVEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:14)
[INFO] Main: Simulation completed successfully. (00:02:15)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.4793 | |
| 2 | V | H | -0.7279 | |
| 3 | Q | H | -1.1333 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.0981 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.4974 | |
| 8 | G | H | -0.4242 | |
| 9 | A | H | 0.3730 | |
| 11 | E | H | 0.1758 | |
| 12 | V | H | 1.0782 | |
| 13 | K | H | -0.9233 | |
| 14 | K | H | -2.1910 | |
| 15 | P | H | -2.3046 | |
| 16 | G | H | -1.6179 | |
| 17 | A | H | -1.2602 | |
| 18 | S | H | -1.3676 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.9827 | |
| 21 | V | H | 0.0000 | |
| 22 | S | H | -0.6042 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -0.8952 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.8236 | |
| 27 | G | H | -0.9948 | |
| 28 | Y | H | -0.5525 | |
| 29 | T | H | -0.4108 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -0.9375 | |
| 36 | N | H | -1.1341 | |
| 37 | Y | H | -0.3657 | |
| 38 | W | H | -0.0055 | |
| 39 | M | H | 0.0000 | |
| 40 | Q | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.4793 | |
| 45 | A | H | -0.8691 | |
| 46 | P | H | -0.9002 | |
| 47 | G | H | -1.2434 | |
| 48 | Q | H | -1.7378 | |
| 49 | G | H | -1.1474 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.7932 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | E | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | D | H | -0.6696 | |
| 58 | P | H | 0.0000 | |
| 59 | S | H | -1.2729 | |
| 62 | D | H | -1.7744 | |
| 63 | S | H | -0.7661 | |
| 64 | Y | H | 0.0905 | |
| 65 | T | H | -0.1086 | |
| 66 | D | H | -0.7070 | |
| 67 | Y | H | -1.2034 | |
| 68 | N | H | -1.8690 | |
| 69 | Q | H | -2.8839 | |
| 70 | K | H | -2.7741 | |
| 71 | F | H | 0.0000 | |
| 72 | Q | H | -2.5533 | |
| 74 | G | H | -1.6190 | |
| 75 | R | H | -1.5139 | |
| 76 | V | H | 0.0000 | |
| 77 | T | H | -0.7266 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.2509 | |
| 80 | R | H | -0.9669 | |
| 81 | D | H | -0.8767 | |
| 82 | T | H | -0.5598 | |
| 83 | S | H | -0.4762 | |
| 84 | T | H | -0.5729 | |
| 85 | S | H | -0.6627 | |
| 86 | T | H | 0.0000 | |
| 87 | V | H | 0.0000 | |
| 88 | Y | H | -0.5926 | |
| 89 | M | H | 0.0000 | |
| 90 | E | H | -1.3476 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -1.1482 | |
| 93 | S | H | -1.2476 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -3.1095 | |
| 96 | S | H | -2.3388 | |
| 97 | E | H | -2.4806 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.6732 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.5979 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | T | H | 0.0000 | |
| 108 | Y | H | 0.1997 | |
| 109 | G | H | -0.8565 | |
| 110 | R | H | -1.7128 | |
| 112 | G | H | -0.6296 | |
| 113 | Y | H | -0.1614 | |
| 114 | Y | H | 0.0000 | |
| 115 | F | H | 0.0000 | |
| 116 | D | H | 0.2003 | |
| 117 | Y | H | 0.4013 | |
| 118 | W | H | -0.0052 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.2383 | |
| 121 | G | H | -0.4868 | |
| 122 | T | H | 0.0000 | |
| 123 | L | H | 1.0792 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | -0.0598 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.9642 | |
| 128 | S | H | -0.7848 | |
| 1 | E | L | -1.6442 | |
| 2 | I | L | 0.0000 | |
| 3 | V | L | 1.1369 | |
| 4 | L | L | 0.0000 | |
| 5 | T | L | -0.2734 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.6912 | |
| 8 | P | L | -0.6233 | |
| 9 | D | L | -1.3698 | |
| 10 | F | L | 0.3669 | |
| 11 | Q | L | -0.3029 | |
| 12 | S | L | -0.5014 | |
| 13 | V | L | -1.4420 | |
| 14 | T | L | -2.1119 | |
| 15 | P | L | -2.4232 | |
| 16 | K | L | -3.5671 | |
| 17 | E | L | -3.6169 | |
| 18 | K | L | -3.2171 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.7989 | |
| 21 | I | L | 0.0000 | |
| 22 | T | L | -0.7337 | |
| 23 | C | L | 0.0000 | |
| 24 | S | L | -0.7513 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -0.2351 | |
| 27 | S | L | -0.5371 | |
| 28 | S | L | -0.6766 | |
| 29 | V | L | 0.0000 | |
| 37 | S | L | 0.0895 | |
| 38 | Y | L | 0.7594 | |
| 39 | M | L | 0.0000 | |
| 40 | H | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | -0.9837 | |
| 45 | K | L | -1.4100 | |
| 46 | P | L | -1.5084 | |
| 47 | D | L | -2.4483 | |
| 48 | Q | L | -2.0484 | |
| 49 | S | L | -1.1740 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -0.6349 | |
| 52 | R | L | -0.2561 | |
| 53 | W | L | -0.2962 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.0670 | |
| 56 | D | L | 0.0000 | |
| 57 | T | L | 0.0000 | |
| 65 | S | L | -0.6594 | |
| 66 | K | L | -1.2113 | |
| 67 | L | L | -0.3681 | |
| 68 | A | L | 0.0000 | |
| 69 | S | L | -0.4739 | |
| 70 | G | L | -0.4357 | |
| 71 | V | L | -0.3130 | |
| 72 | P | L | -0.2404 | |
| 74 | S | L | -0.5177 | |
| 75 | R | L | -1.2480 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.7155 | |
| 78 | G | L | -0.5087 | |
| 79 | S | L | -0.7301 | |
| 80 | G | L | -0.9241 | |
| 83 | S | L | -0.8300 | |
| 84 | G | L | -0.8422 | |
| 85 | T | L | -1.1751 | |
| 86 | D | L | -2.1269 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.6308 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.8613 | |
| 91 | I | L | 0.0000 | |
| 92 | N | L | -2.9045 | |
| 93 | S | L | -3.0190 | |
| 94 | L | L | 0.0000 | |
| 95 | E | L | -2.9908 | |
| 96 | A | L | -2.0775 | |
| 97 | E | L | -2.3752 | |
| 98 | D | L | 0.0000 | |
| 99 | A | L | -1.2848 | |
| 100 | A | L | 0.0000 | |
| 101 | T | L | -0.7709 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | W | L | 0.1759 | |
| 108 | S | L | -0.2665 | |
| 109 | S | L | -0.6705 | |
| 114 | S | L | -0.9014 | |
| 115 | P | L | -1.2849 | |
| 116 | W | L | 0.0000 | |
| 117 | T | L | -0.1588 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -1.0066 | |
| 121 | G | L | -0.9583 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.1955 | |
| 124 | V | L | 0.0000 | |
| 125 | E | L | -1.1429 | |
| 126 | I | L | -1.6523 | |
| 127 | K | L | -2.0218 |