Project name: 2E6Z01

Status: done

Started: 2025-11-12 05:21:38
Settings
Chain sequence(s) H: QVQLVQSGAEVKKPGASVKVSCKASGYTFTNYWMQWVRQAPGQGLEWIGEIDPSDSYTDYNQKFQGRVTLTRDTSTSTVYMELSSLRSEDTAVYYCARTYGRGYYFDYWGQGTLVTVSS
L: EIVLTQSPDFQSVTPKEKVTITCSASSSVSYMHWYQQKPDQSPKRWIYDTSKLASGVPSRFSGSGSGTDFTLTINSLEAEDAATYYCQQWSSSPWTFGGGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:14)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:15)
Show buried residues

Minimal score value
-3.6169
Maximal score value
1.1369
Average score
-0.6465
Total score value
-145.465

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.4793
2 V H -0.7279
3 Q H -1.1333
4 L H 0.0000
5 V H 0.0981
6 Q H 0.0000
7 S H -0.4974
8 G H -0.4242
9 A H 0.3730
11 E H 0.1758
12 V H 1.0782
13 K H -0.9233
14 K H -2.1910
15 P H -2.3046
16 G H -1.6179
17 A H -1.2602
18 S H -1.3676
19 V H 0.0000
20 K H -1.9827
21 V H 0.0000
22 S H -0.6042
23 C H 0.0000
24 K H -0.8952
25 A H 0.0000
26 S H -0.8236
27 G H -0.9948
28 Y H -0.5525
29 T H -0.4108
30 F H 0.0000
35 T H -0.9375
36 N H -1.1341
37 Y H -0.3657
38 W H -0.0055
39 M H 0.0000
40 Q H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.4793
45 A H -0.8691
46 P H -0.9002
47 G H -1.2434
48 Q H -1.7378
49 G H -1.1474
50 L H 0.0000
51 E H -0.7932
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 E H 0.0000
56 I H 0.0000
57 D H -0.6696
58 P H 0.0000
59 S H -1.2729
62 D H -1.7744
63 S H -0.7661
64 Y H 0.0905
65 T H -0.1086
66 D H -0.7070
67 Y H -1.2034
68 N H -1.8690
69 Q H -2.8839
70 K H -2.7741
71 F H 0.0000
72 Q H -2.5533
74 G H -1.6190
75 R H -1.5139
76 V H 0.0000
77 T H -0.7266
78 L H 0.0000
79 T H -0.2509
80 R H -0.9669
81 D H -0.8767
82 T H -0.5598
83 S H -0.4762
84 T H -0.5729
85 S H -0.6627
86 T H 0.0000
87 V H 0.0000
88 Y H -0.5926
89 M H 0.0000
90 E H -1.3476
91 L H 0.0000
92 S H -1.1482
93 S H -1.2476
94 L H 0.0000
95 R H -3.1095
96 S H -2.3388
97 E H -2.4806
98 D H 0.0000
99 T H -0.6732
100 A H 0.0000
101 V H 0.5979
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 T H 0.0000
108 Y H 0.1997
109 G H -0.8565
110 R H -1.7128
112 G H -0.6296
113 Y H -0.1614
114 Y H 0.0000
115 F H 0.0000
116 D H 0.2003
117 Y H 0.4013
118 W H -0.0052
119 G H 0.0000
120 Q H -1.2383
121 G H -0.4868
122 T H 0.0000
123 L H 1.0792
124 V H 0.0000
125 T H -0.0598
126 V H 0.0000
127 S H -0.9642
128 S H -0.7848
1 E L -1.6442
2 I L 0.0000
3 V L 1.1369
4 L L 0.0000
5 T L -0.2734
6 Q L 0.0000
7 S L -0.6912
8 P L -0.6233
9 D L -1.3698
10 F L 0.3669
11 Q L -0.3029
12 S L -0.5014
13 V L -1.4420
14 T L -2.1119
15 P L -2.4232
16 K L -3.5671
17 E L -3.6169
18 K L -3.2171
19 V L 0.0000
20 T L -0.7989
21 I L 0.0000
22 T L -0.7337
23 C L 0.0000
24 S L -0.7513
25 A L 0.0000
26 S L -0.2351
27 S L -0.5371
28 S L -0.6766
29 V L 0.0000
37 S L 0.0895
38 Y L 0.7594
39 M L 0.0000
40 H L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -0.9837
45 K L -1.4100
46 P L -1.5084
47 D L -2.4483
48 Q L -2.0484
49 S L -1.1740
50 P L 0.0000
51 K L -0.6349
52 R L -0.2561
53 W L -0.2962
54 I L 0.0000
55 Y L -0.0670
56 D L 0.0000
57 T L 0.0000
65 S L -0.6594
66 K L -1.2113
67 L L -0.3681
68 A L 0.0000
69 S L -0.4739
70 G L -0.4357
71 V L -0.3130
72 P L -0.2404
74 S L -0.5177
75 R L -1.2480
76 F L 0.0000
77 S L -0.7155
78 G L -0.5087
79 S L -0.7301
80 G L -0.9241
83 S L -0.8300
84 G L -0.8422
85 T L -1.1751
86 D L -2.1269
87 F L 0.0000
88 T L -0.6308
89 L L 0.0000
90 T L -0.8613
91 I L 0.0000
92 N L -2.9045
93 S L -3.0190
94 L L 0.0000
95 E L -2.9908
96 A L -2.0775
97 E L -2.3752
98 D L 0.0000
99 A L -1.2848
100 A L 0.0000
101 T L -0.7709
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 W L 0.1759
108 S L -0.2665
109 S L -0.6705
114 S L -0.9014
115 P L -1.2849
116 W L 0.0000
117 T L -0.1588
118 F L 0.0000
119 G L 0.0000
120 G L -1.0066
121 G L -0.9583
122 T L 0.0000
123 K L -1.1955
124 V L 0.0000
125 E L -1.1429
126 I L -1.6523
127 K L -2.0218
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Laboratory of Theory of Biopolymers 2018