| Chain sequence(s) |
H: QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKDGKCAGGSCYSGLLDYWGQGTLVTVSS
L: EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWPPWTFGQGTKVEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:55)
[INFO] Main: Simulation completed successfully. (00:00:56)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.3892 | |
| 2 | V | H | -0.6681 | |
| 3 | Q | H | -1.0648 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | -0.0110 | |
| 6 | E | H | 0.0000 | |
| 7 | S | H | -0.2740 | |
| 8 | G | H | -0.6482 | |
| 9 | G | H | 0.1889 | |
| 11 | G | H | 0.8593 | |
| 12 | V | H | 1.6625 | |
| 13 | V | H | 0.0000 | |
| 14 | Q | H | -1.2150 | |
| 15 | P | H | -1.7828 | |
| 16 | G | H | -2.0314 | |
| 17 | R | H | -2.6050 | |
| 18 | S | H | -1.7310 | |
| 19 | L | H | -1.0134 | |
| 20 | R | H | -1.5370 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.4445 | |
| 23 | C | H | 0.0000 | |
| 24 | A | H | -0.4846 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.7619 | |
| 27 | G | H | -0.9380 | |
| 28 | F | H | -0.3979 | |
| 29 | T | H | -0.1169 | |
| 30 | F | H | 0.0000 | |
| 35 | S | H | -0.5998 | |
| 36 | S | H | -0.2694 | |
| 37 | Y | H | -0.0230 | |
| 38 | G | H | 0.0000 | |
| 39 | M | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.6366 | |
| 45 | A | H | -1.0206 | |
| 46 | P | H | -0.8086 | |
| 47 | G | H | -1.4813 | |
| 48 | K | H | -2.3767 | |
| 49 | G | H | -1.5767 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -1.0017 | |
| 52 | W | H | 0.0000 | |
| 53 | V | H | 0.0000 | |
| 54 | A | H | 0.0000 | |
| 55 | V | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | S | H | 0.0000 | |
| 58 | Y | H | 0.2106 | |
| 59 | D | H | -0.9329 | |
| 62 | G | H | -0.9367 | |
| 63 | S | H | -0.9473 | |
| 64 | N | H | -1.2158 | |
| 65 | K | H | -0.9601 | |
| 66 | Y | H | -0.5439 | |
| 67 | Y | H | -0.8943 | |
| 68 | A | H | -1.3618 | |
| 69 | D | H | -2.4577 | |
| 70 | S | H | -1.7347 | |
| 71 | V | H | 0.0000 | |
| 72 | K | H | -2.5560 | |
| 74 | G | H | -1.7073 | |
| 75 | R | H | -1.4210 | |
| 76 | F | H | 0.0000 | |
| 77 | T | H | -0.8151 | |
| 78 | I | H | 0.0000 | |
| 79 | S | H | -0.6319 | |
| 80 | R | H | -0.9103 | |
| 81 | D | H | -1.5510 | |
| 82 | N | H | -1.6334 | |
| 83 | S | H | -1.5516 | |
| 84 | K | H | -2.3864 | |
| 85 | N | H | -1.8217 | |
| 86 | T | H | -1.1002 | |
| 87 | L | H | 0.0000 | |
| 88 | Y | H | -0.4145 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -1.0026 | |
| 91 | M | H | 0.0000 | |
| 92 | N | H | -1.6438 | |
| 93 | S | H | -1.6344 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -2.2106 | |
| 96 | A | H | -1.5412 | |
| 97 | E | H | -2.1700 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.3101 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.7410 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | K | H | 0.0000 | |
| 107 | D | H | 0.0000 | |
| 108 | G | H | 0.0000 | |
| 109 | K | H | -1.7069 | |
| 110 | C | H | -0.8730 | |
| 111 | A | H | -0.7181 | |
| 111A | G | H | -0.8650 | |
| 111B | G | H | -0.8775 | |
| 112C | S | H | -0.4665 | |
| 112B | C | H | -0.1610 | |
| 112A | Y | H | 0.0002 | |
| 112 | S | H | -0.2914 | |
| 113 | G | H | 0.0000 | |
| 114 | L | H | 0.0362 | |
| 115 | L | H | 0.0000 | |
| 116 | D | H | -0.1124 | |
| 117 | Y | H | 0.4543 | |
| 118 | W | H | -0.1081 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.2464 | |
| 121 | G | H | -0.3631 | |
| 122 | T | H | 0.4141 | |
| 123 | L | H | 1.5569 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.4980 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.4332 | |
| 128 | S | H | -0.3524 | |
| 1 | E | L | -1.7485 | |
| 2 | I | L | 0.0000 | |
| 3 | V | L | 0.6883 | |
| 4 | L | L | 0.0000 | |
| 5 | T | L | -0.7149 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.7708 | |
| 8 | P | L | -0.3484 | |
| 9 | A | L | -0.4542 | |
| 10 | T | L | -0.4461 | |
| 11 | L | L | -0.1149 | |
| 12 | S | L | -0.2128 | |
| 13 | L | L | -0.4769 | |
| 14 | S | L | -0.8539 | |
| 15 | P | L | -1.2171 | |
| 16 | G | L | -1.5753 | |
| 17 | E | L | -1.9954 | |
| 18 | R | L | -2.3814 | |
| 19 | A | L | 0.0000 | |
| 20 | T | L | -0.6443 | |
| 21 | L | L | 0.0000 | |
| 22 | S | L | -0.8640 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.3014 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -0.9456 | |
| 27 | Q | L | -1.5334 | |
| 28 | S | L | -1.3349 | |
| 29 | V | L | 0.0000 | |
| 36 | S | L | -0.6481 | |
| 37 | S | L | -0.2304 | |
| 38 | Y | L | 0.3067 | |
| 39 | L | L | 0.0000 | |
| 40 | A | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.1869 | |
| 46 | P | L | -0.9851 | |
| 47 | G | L | -1.4320 | |
| 48 | Q | L | -1.9970 | |
| 49 | A | L | -1.1894 | |
| 50 | P | L | 0.0000 | |
| 51 | R | L | -0.6835 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.1201 | |
| 56 | D | L | -0.3432 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.8814 | |
| 66 | N | L | -1.2937 | |
| 67 | R | L | -1.4850 | |
| 68 | A | L | -0.8474 | |
| 69 | T | L | -0.6225 | |
| 70 | G | L | -0.5839 | |
| 71 | I | L | -0.5574 | |
| 72 | P | L | -0.3383 | |
| 74 | A | L | -0.3182 | |
| 75 | R | L | -0.5989 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.6416 | |
| 78 | G | L | 0.0000 | |
| 79 | S | L | -0.7561 | |
| 80 | G | L | -1.0727 | |
| 83 | S | L | -0.9794 | |
| 84 | G | L | -1.0773 | |
| 85 | T | L | -1.6996 | |
| 86 | D | L | -2.0957 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.7502 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.6037 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.2455 | |
| 93 | S | L | -1.5267 | |
| 94 | L | L | 0.0000 | |
| 95 | E | L | -1.6477 | |
| 96 | P | L | -0.9175 | |
| 97 | E | L | -1.3706 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | -0.1436 | |
| 100 | A | L | 0.0000 | |
| 101 | V | L | -0.2360 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | R | L | -0.2282 | |
| 108 | S | L | -0.5502 | |
| 109 | N | L | -1.5052 | |
| 113 | W | L | -0.6528 | |
| 114 | P | L | -0.5548 | |
| 115 | P | L | -0.8688 | |
| 116 | W | L | 0.0000 | |
| 117 | T | L | -0.2601 | |
| 118 | F | L | 0.0287 | |
| 119 | G | L | 0.0000 | |
| 120 | Q | L | -1.3074 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.0334 | |
| 124 | V | L | 0.0000 | |
| 125 | E | L | 0.0084 | |
| 126 | I | L | 1.0160 | |
| 127 | K | L | -0.8030 |