Project name: 3F12

Status: done

Started: 2026-03-30 04:28:15
Settings
Chain sequence(s) H: QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKDGKCAGGSCYSGLLDYWGQGTLVTVSS
L: EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWPPWTFGQGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:55)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:56)
Show buried residues

Minimal score value
-2.605
Maximal score value
1.6625
Average score
-0.5649
Total score value
-131.6167

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.3892
2 V H -0.6681
3 Q H -1.0648
4 L H 0.0000
5 V H -0.0110
6 E H 0.0000
7 S H -0.2740
8 G H -0.6482
9 G H 0.1889
11 G H 0.8593
12 V H 1.6625
13 V H 0.0000
14 Q H -1.2150
15 P H -1.7828
16 G H -2.0314
17 R H -2.6050
18 S H -1.7310
19 L H -1.0134
20 R H -1.5370
21 L H 0.0000
22 S H -0.4445
23 C H 0.0000
24 A H -0.4846
25 A H 0.0000
26 S H -0.7619
27 G H -0.9380
28 F H -0.3979
29 T H -0.1169
30 F H 0.0000
35 S H -0.5998
36 S H -0.2694
37 Y H -0.0230
38 G H 0.0000
39 M H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.6366
45 A H -1.0206
46 P H -0.8086
47 G H -1.4813
48 K H -2.3767
49 G H -1.5767
50 L H 0.0000
51 E H -1.0017
52 W H 0.0000
53 V H 0.0000
54 A H 0.0000
55 V H 0.0000
56 I H 0.0000
57 S H 0.0000
58 Y H 0.2106
59 D H -0.9329
62 G H -0.9367
63 S H -0.9473
64 N H -1.2158
65 K H -0.9601
66 Y H -0.5439
67 Y H -0.8943
68 A H -1.3618
69 D H -2.4577
70 S H -1.7347
71 V H 0.0000
72 K H -2.5560
74 G H -1.7073
75 R H -1.4210
76 F H 0.0000
77 T H -0.8151
78 I H 0.0000
79 S H -0.6319
80 R H -0.9103
81 D H -1.5510
82 N H -1.6334
83 S H -1.5516
84 K H -2.3864
85 N H -1.8217
86 T H -1.1002
87 L H 0.0000
88 Y H -0.4145
89 L H 0.0000
90 Q H -1.0026
91 M H 0.0000
92 N H -1.6438
93 S H -1.6344
94 L H 0.0000
95 R H -2.2106
96 A H -1.5412
97 E H -2.1700
98 D H 0.0000
99 T H -0.3101
100 A H 0.0000
101 V H 0.7410
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 K H 0.0000
107 D H 0.0000
108 G H 0.0000
109 K H -1.7069
110 C H -0.8730
111 A H -0.7181
111A G H -0.8650
111B G H -0.8775
112C S H -0.4665
112B C H -0.1610
112A Y H 0.0002
112 S H -0.2914
113 G H 0.0000
114 L H 0.0362
115 L H 0.0000
116 D H -0.1124
117 Y H 0.4543
118 W H -0.1081
119 G H 0.0000
120 Q H -1.2464
121 G H -0.3631
122 T H 0.4141
123 L H 1.5569
124 V H 0.0000
125 T H 0.4980
126 V H 0.0000
127 S H -0.4332
128 S H -0.3524
1 E L -1.7485
2 I L 0.0000
3 V L 0.6883
4 L L 0.0000
5 T L -0.7149
6 Q L 0.0000
7 S L -0.7708
8 P L -0.3484
9 A L -0.4542
10 T L -0.4461
11 L L -0.1149
12 S L -0.2128
13 L L -0.4769
14 S L -0.8539
15 P L -1.2171
16 G L -1.5753
17 E L -1.9954
18 R L -2.3814
19 A L 0.0000
20 T L -0.6443
21 L L 0.0000
22 S L -0.8640
23 C L 0.0000
24 R L -2.3014
25 A L 0.0000
26 S L -0.9456
27 Q L -1.5334
28 S L -1.3349
29 V L 0.0000
36 S L -0.6481
37 S L -0.2304
38 Y L 0.3067
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.1869
46 P L -0.9851
47 G L -1.4320
48 Q L -1.9970
49 A L -1.1894
50 P L 0.0000
51 R L -0.6835
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.1201
56 D L -0.3432
57 A L 0.0000
65 S L -0.8814
66 N L -1.2937
67 R L -1.4850
68 A L -0.8474
69 T L -0.6225
70 G L -0.5839
71 I L -0.5574
72 P L -0.3383
74 A L -0.3182
75 R L -0.5989
76 F L 0.0000
77 S L -0.6416
78 G L 0.0000
79 S L -0.7561
80 G L -1.0727
83 S L -0.9794
84 G L -1.0773
85 T L -1.6996
86 D L -2.0957
87 F L 0.0000
88 T L -0.7502
89 L L 0.0000
90 T L -0.6037
91 I L 0.0000
92 S L -1.2455
93 S L -1.5267
94 L L 0.0000
95 E L -1.6477
96 P L -0.9175
97 E L -1.3706
98 D L 0.0000
99 F L -0.1436
100 A L 0.0000
101 V L -0.2360
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 R L -0.2282
108 S L -0.5502
109 N L -1.5052
113 W L -0.6528
114 P L -0.5548
115 P L -0.8688
116 W L 0.0000
117 T L -0.2601
118 F L 0.0287
119 G L 0.0000
120 Q L -1.3074
121 G L 0.0000
122 T L 0.0000
123 K L -1.0334
124 V L 0.0000
125 E L 0.0084
126 I L 1.0160
127 K L -0.8030
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Laboratory of Theory of Biopolymers 2018