| Chain sequence(s) |
H: GVQLVETGGGLVQPKGSLKLSCAASGFTFNAVAMNWVRQAPGKGLEWVARIRSKSNNYATYHADSVKDRFTISRDDSQSMLYLQMNNLKTEDTAMYYCVRGGHPYAMDYWGQGTSVTVSS
L: DIVMTQSPATLSVTPGDRVSLSCRASQSISDYLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGSDFTLRINSVEPEDVGVYYCQNGHSFPPTFGGGTKLEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:13)
[INFO] Main: Simulation completed successfully. (00:01:14)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | H | -0.7067 | |
| 2 | V | H | -0.4924 | |
| 3 | Q | H | -1.0894 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.1816 | |
| 6 | E | H | 0.0000 | |
| 7 | T | H | -0.3533 | |
| 8 | G | H | -0.6139 | |
| 9 | G | H | -0.2647 | |
| 11 | G | H | 0.4075 | |
| 12 | L | H | 1.1619 | |
| 13 | V | H | -0.1752 | |
| 14 | Q | H | -1.7071 | |
| 15 | P | H | -2.3046 | |
| 16 | K | H | -3.1244 | |
| 17 | G | H | -1.9036 | |
| 18 | S | H | -1.6181 | |
| 19 | L | H | -0.7130 | |
| 20 | K | H | -1.2050 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | 0.0000 | |
| 23 | C | H | 0.0000 | |
| 24 | A | H | -0.1111 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.7166 | |
| 27 | G | H | -0.7418 | |
| 28 | F | H | -0.2766 | |
| 29 | T | H | -0.2483 | |
| 30 | F | H | 0.0000 | |
| 35 | N | H | -1.5821 | |
| 36 | A | H | -0.7435 | |
| 37 | V | H | -0.6541 | |
| 38 | A | H | -0.8329 | |
| 39 | M | H | 0.0000 | |
| 40 | N | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | 0.0000 | |
| 45 | A | H | -1.1904 | |
| 46 | P | H | -0.9886 | |
| 47 | G | H | -1.4323 | |
| 48 | K | H | -2.2358 | |
| 49 | G | H | -1.3491 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.8791 | |
| 52 | W | H | 0.0000 | |
| 53 | V | H | 0.0000 | |
| 54 | A | H | 0.0000 | |
| 55 | R | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | R | H | -1.5860 | |
| 58 | S | H | -1.8929 | |
| 59 | K | H | -2.8052 | |
| 60 | S | H | -1.9838 | |
| 61 | N | H | -2.2773 | |
| 62 | N | H | -2.3494 | |
| 63 | Y | H | -1.3925 | |
| 64 | A | H | -0.8800 | |
| 65 | T | H | -0.2275 | |
| 66 | Y | H | 0.0848 | |
| 67 | H | H | -1.0010 | |
| 68 | A | H | -1.3082 | |
| 69 | D | H | -2.5507 | |
| 70 | S | H | -1.8761 | |
| 71 | V | H | 0.0000 | |
| 72 | K | H | -2.7398 | |
| 74 | D | H | -2.9898 | |
| 75 | R | H | -2.6011 | |
| 76 | F | H | 0.0000 | |
| 77 | T | H | -0.9342 | |
| 78 | I | H | 0.0000 | |
| 79 | S | H | -0.2893 | |
| 80 | R | H | -0.8939 | |
| 81 | D | H | -1.1405 | |
| 82 | D | H | -1.5877 | |
| 83 | S | H | -1.2330 | |
| 84 | Q | H | -1.6228 | |
| 85 | S | H | -1.0674 | |
| 86 | M | H | -0.5432 | |
| 87 | L | H | 0.0000 | |
| 88 | Y | H | -0.2299 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -0.9229 | |
| 91 | M | H | 0.0000 | |
| 92 | N | H | -2.2513 | |
| 93 | N | H | -3.0514 | |
| 94 | L | H | 0.0000 | |
| 95 | K | H | -2.6878 | |
| 96 | T | H | -1.8572 | |
| 97 | E | H | -2.2272 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.6734 | |
| 100 | A | H | 0.0000 | |
| 101 | M | H | -0.0489 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | V | H | 0.0000 | |
| 106 | R | H | -0.0206 | |
| 107 | G | H | 0.0000 | |
| 108 | G | H | -0.4348 | |
| 109 | H | H | -0.9782 | |
| 110 | P | H | -0.3923 | |
| 113 | Y | H | -0.1495 | |
| 114 | A | H | 0.0000 | |
| 115 | M | H | 0.0000 | |
| 116 | D | H | 0.0587 | |
| 117 | Y | H | 0.3734 | |
| 118 | W | H | -0.1222 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.4128 | |
| 121 | G | H | -0.6680 | |
| 122 | T | H | 0.0000 | |
| 123 | S | H | -0.2107 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | -0.0798 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.8407 | |
| 128 | S | H | -0.7180 | |
| 1 | D | L | -1.1884 | |
| 2 | I | L | 0.0000 | |
| 3 | V | L | 0.7355 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -0.6591 | |
| 6 | Q | L | -0.8060 | |
| 7 | S | L | -0.7858 | |
| 8 | P | L | -0.4833 | |
| 9 | A | L | -0.5368 | |
| 10 | T | L | -0.8927 | |
| 11 | L | L | -0.7374 | |
| 12 | S | L | -0.9999 | |
| 13 | V | L | 0.0000 | |
| 14 | T | L | -1.5650 | |
| 15 | P | L | -1.6676 | |
| 16 | G | L | -1.8596 | |
| 17 | D | L | -2.4063 | |
| 18 | R | L | -3.1115 | |
| 19 | V | L | 0.0000 | |
| 20 | S | L | -1.2807 | |
| 21 | L | L | 0.0000 | |
| 22 | S | L | -1.0788 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.4727 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -0.9735 | |
| 27 | Q | L | -1.5279 | |
| 28 | S | L | -1.4446 | |
| 29 | I | L | 0.0000 | |
| 36 | S | L | -1.0119 | |
| 37 | D | L | -1.3269 | |
| 38 | Y | L | -0.3408 | |
| 39 | L | L | 0.0000 | |
| 40 | H | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | -0.8094 | |
| 45 | K | L | -1.0497 | |
| 46 | S | L | -0.9087 | |
| 47 | H | L | -1.6819 | |
| 48 | E | L | -1.6644 | |
| 49 | S | L | -1.0073 | |
| 50 | P | L | 0.0000 | |
| 51 | R | L | -0.5158 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | K | L | -0.5226 | |
| 56 | Y | L | -0.5092 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.9279 | |
| 66 | Q | L | -1.1646 | |
| 67 | S | L | -0.6972 | |
| 68 | I | L | -0.2601 | |
| 69 | S | L | -0.2733 | |
| 70 | G | L | -0.4277 | |
| 71 | I | L | -0.1597 | |
| 72 | P | L | -0.3488 | |
| 74 | S | L | -0.5579 | |
| 75 | R | L | -1.2970 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -1.1070 | |
| 78 | G | L | -0.8910 | |
| 79 | S | L | -1.0137 | |
| 80 | G | L | -1.3468 | |
| 83 | S | L | -1.3659 | |
| 84 | G | L | -1.4064 | |
| 85 | S | L | -2.0126 | |
| 86 | D | L | -2.5642 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -1.1429 | |
| 89 | L | L | 0.0000 | |
| 90 | R | L | -1.9729 | |
| 91 | I | L | 0.0000 | |
| 92 | N | L | -2.5464 | |
| 93 | S | L | -2.1606 | |
| 94 | V | L | 0.0000 | |
| 95 | E | L | -1.4054 | |
| 96 | P | L | -1.0887 | |
| 97 | E | L | -0.9243 | |
| 98 | D | L | 0.0000 | |
| 99 | V | L | -0.0421 | |
| 100 | G | L | -0.6676 | |
| 101 | V | L | -0.6622 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | N | L | 0.0000 | |
| 107 | G | L | -0.1525 | |
| 108 | H | L | -0.4652 | |
| 109 | S | L | 0.1220 | |
| 114 | F | L | 1.1949 | |
| 115 | P | L | 0.1916 | |
| 116 | P | L | 0.0000 | |
| 117 | T | L | 0.0941 | |
| 118 | F | L | 0.1713 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -0.7610 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.7260 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -1.4809 | |
| 126 | I | L | -1.0174 | |
| 127 | K | L | -1.8112 |