Project name: 13D3D12

Status: done

Started: 2026-07-22 08:10:13
Settings
Chain sequence(s) H: GVQLVETGGGLVQPKGSLKLSCAASGFTFNAVAMNWVRQAPGKGLEWVARIRSKSNNYATYHADSVKDRFTISRDDSQSMLYLQMNNLKTEDTAMYYCVRGGHPYAMDYWGQGTSVTVSS
L: DIVMTQSPATLSVTPGDRVSLSCRASQSISDYLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGSDFTLRINSVEPEDVGVYYCQNGHSFPPTFGGGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:13)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:14)
Show buried residues

Minimal score value
-3.1244
Maximal score value
1.1949
Average score
-0.7088
Total score value
-160.9026

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G H -0.7067
2 V H -0.4924
3 Q H -1.0894
4 L H 0.0000
5 V H 0.1816
6 E H 0.0000
7 T H -0.3533
8 G H -0.6139
9 G H -0.2647
11 G H 0.4075
12 L H 1.1619
13 V H -0.1752
14 Q H -1.7071
15 P H -2.3046
16 K H -3.1244
17 G H -1.9036
18 S H -1.6181
19 L H -0.7130
20 K H -1.2050
21 L H 0.0000
22 S H 0.0000
23 C H 0.0000
24 A H -0.1111
25 A H 0.0000
26 S H -0.7166
27 G H -0.7418
28 F H -0.2766
29 T H -0.2483
30 F H 0.0000
35 N H -1.5821
36 A H -0.7435
37 V H -0.6541
38 A H -0.8329
39 M H 0.0000
40 N H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H 0.0000
45 A H -1.1904
46 P H -0.9886
47 G H -1.4323
48 K H -2.2358
49 G H -1.3491
50 L H 0.0000
51 E H -0.8791
52 W H 0.0000
53 V H 0.0000
54 A H 0.0000
55 R H 0.0000
56 I H 0.0000
57 R H -1.5860
58 S H -1.8929
59 K H -2.8052
60 S H -1.9838
61 N H -2.2773
62 N H -2.3494
63 Y H -1.3925
64 A H -0.8800
65 T H -0.2275
66 Y H 0.0848
67 H H -1.0010
68 A H -1.3082
69 D H -2.5507
70 S H -1.8761
71 V H 0.0000
72 K H -2.7398
74 D H -2.9898
75 R H -2.6011
76 F H 0.0000
77 T H -0.9342
78 I H 0.0000
79 S H -0.2893
80 R H -0.8939
81 D H -1.1405
82 D H -1.5877
83 S H -1.2330
84 Q H -1.6228
85 S H -1.0674
86 M H -0.5432
87 L H 0.0000
88 Y H -0.2299
89 L H 0.0000
90 Q H -0.9229
91 M H 0.0000
92 N H -2.2513
93 N H -3.0514
94 L H 0.0000
95 K H -2.6878
96 T H -1.8572
97 E H -2.2272
98 D H 0.0000
99 T H -0.6734
100 A H 0.0000
101 M H -0.0489
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 V H 0.0000
106 R H -0.0206
107 G H 0.0000
108 G H -0.4348
109 H H -0.9782
110 P H -0.3923
113 Y H -0.1495
114 A H 0.0000
115 M H 0.0000
116 D H 0.0587
117 Y H 0.3734
118 W H -0.1222
119 G H 0.0000
120 Q H -1.4128
121 G H -0.6680
122 T H 0.0000
123 S H -0.2107
124 V H 0.0000
125 T H -0.0798
126 V H 0.0000
127 S H -0.8407
128 S H -0.7180
1 D L -1.1884
2 I L 0.0000
3 V L 0.7355
4 M L 0.0000
5 T L -0.6591
6 Q L -0.8060
7 S L -0.7858
8 P L -0.4833
9 A L -0.5368
10 T L -0.8927
11 L L -0.7374
12 S L -0.9999
13 V L 0.0000
14 T L -1.5650
15 P L -1.6676
16 G L -1.8596
17 D L -2.4063
18 R L -3.1115
19 V L 0.0000
20 S L -1.2807
21 L L 0.0000
22 S L -1.0788
23 C L 0.0000
24 R L -2.4727
25 A L 0.0000
26 S L -0.9735
27 Q L -1.5279
28 S L -1.4446
29 I L 0.0000
36 S L -1.0119
37 D L -1.3269
38 Y L -0.3408
39 L L 0.0000
40 H L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -0.8094
45 K L -1.0497
46 S L -0.9087
47 H L -1.6819
48 E L -1.6644
49 S L -1.0073
50 P L 0.0000
51 R L -0.5158
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 K L -0.5226
56 Y L -0.5092
57 A L 0.0000
65 S L -0.9279
66 Q L -1.1646
67 S L -0.6972
68 I L -0.2601
69 S L -0.2733
70 G L -0.4277
71 I L -0.1597
72 P L -0.3488
74 S L -0.5579
75 R L -1.2970
76 F L 0.0000
77 S L -1.1070
78 G L -0.8910
79 S L -1.0137
80 G L -1.3468
83 S L -1.3659
84 G L -1.4064
85 S L -2.0126
86 D L -2.5642
87 F L 0.0000
88 T L -1.1429
89 L L 0.0000
90 R L -1.9729
91 I L 0.0000
92 N L -2.5464
93 S L -2.1606
94 V L 0.0000
95 E L -1.4054
96 P L -1.0887
97 E L -0.9243
98 D L 0.0000
99 V L -0.0421
100 G L -0.6676
101 V L -0.6622
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 N L 0.0000
107 G L -0.1525
108 H L -0.4652
109 S L 0.1220
114 F L 1.1949
115 P L 0.1916
116 P L 0.0000
117 T L 0.0941
118 F L 0.1713
119 G L 0.0000
120 G L -0.7610
121 G L 0.0000
122 T L 0.0000
123 K L -1.7260
124 L L 0.0000
125 E L -1.4809
126 I L -1.0174
127 K L -1.8112
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Laboratory of Theory of Biopolymers 2018