Project name: 50329f85609fcb7

Status: done

Started: 2025-08-10 19:10:28
Settings
Chain sequence(s) A: AIITVTPKSFGSPGSLGKLLCEVTPVSGQERFVWSSLDTPSQRSFSGPWLEAQEAQLLSQPWQCQLYQGERLLGAAVYFTEL
H: QVQLVQSGAEVKKPGASVKVSCKASGFTLTNYGMNWVRQARGQRLEWIGWINTDTGEPTYADDFKGRFVFSLDTSVSTAYLQISSLKAEDTAVYYCARNPPYYYGTNYAEAMDYWGQGTTVTVSS
L: DIQMTQSPSSLSASVGDRVTITCSSSQDISNYLNWYLQKPGQSPQLLIYYTSTLHLGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYYNLPWTFGQGTKVEIK
input PDB
Selected Chain(s) A,H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:09)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:11)
Show buried residues

Minimal score value
-3.2802
Maximal score value
2.1404
Average score
-0.461
Total score value
-144.7634

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A 0.3942
2 I A 0.6518
3 I A 0.1332
4 T A -0.1280
5 V A -0.1077
6 T A -0.5592
7 P A -1.1337
8 K A -1.7061
9 S A -0.7142
10 F A 0.8340
11 G A -0.0442
12 S A -0.1379
13 P A -0.3536
14 G A -0.8342
15 S A -0.9355
16 L A -0.4675
17 G A 0.0000
18 K A -0.8318
19 L A 0.0000
20 L A -0.6029
21 C A 0.0000
22 E A -1.1885
23 V A -0.0437
24 T A 0.2227
25 P A 0.5059
26 V A 1.0831
27 S A -0.0312
28 G A -0.8711
29 Q A -1.6833
30 E A -1.4701
31 R A -1.9571
32 F A -0.4526
33 V A -0.1996
34 W A 0.0000
35 S A -0.3267
36 S A 0.0000
37 L A 0.0952
38 D A -1.6050
39 T A -0.9755
40 P A -0.7217
41 S A -0.2650
42 Q A -0.3578
43 R A 0.0000
44 S A 0.0000
45 F A 0.0000
46 S A -0.2813
47 G A -0.2604
48 P A -0.3199
49 W A 0.0741
50 L A 0.0000
51 E A -0.5685
52 A A -1.1240
53 Q A 0.0000
54 E A -2.1115
55 A A -1.2252
56 Q A -1.2062
57 L A -0.2635
58 L A 0.9727
59 S A -0.0039
60 Q A -0.4182
61 P A 0.0000
62 W A 0.0000
63 Q A 0.3754
64 C A 0.0000
65 Q A 0.1239
66 L A 0.0000
67 Y A -0.9662
68 Q A -1.6127
69 G A -2.0656
70 E A -2.8978
71 R A -2.1577
72 L A 0.0881
73 L A 0.8129
74 G A 0.4647
75 A A 0.5271
76 A A 0.5043
77 V A 1.3144
78 Y A 1.4683
79 F A 2.0682
80 T A 0.9410
81 E A -0.5182
82 L A 1.1070
83 Q H -1.4709
84 V H -0.7788
85 Q H -1.2560
86 L H 0.0000
87 V H 0.3654
88 Q H 0.0000
89 S H -0.4685
90 G H -0.5693
91 A H 0.0195
92 E H 0.1306
93 V H 0.9620
94 K H -0.8757
95 K H -2.0793
96 P H -1.8635
97 G H -1.4489
98 A H -1.1709
99 S H -1.1466
100 V H 0.0000
101 K H -1.4290
102 V H 0.0000
103 S H -0.3664
104 C H 0.0000
105 K H -0.6012
106 A H -0.3559
107 S H -0.7557
108 G H -1.0022
109 F H -0.3039
110 T H -0.0102
111 L H 0.0000
112 T H -0.5143
113 N H -0.8257
114 Y H 0.1489
115 G H 0.0000
116 M H 0.0000
117 N H 0.0000
118 W H 0.0000
119 V H 0.0000
120 R H -0.4207
121 Q H -0.9325
122 A H -1.5773
123 R H -2.4176
124 G H -2.0259
125 Q H -1.6049
126 R H -1.0190
127 L H 0.0000
128 E H -0.6350
129 W H 0.0000
130 I H 0.0000
131 G H 0.0000
132 W H 0.0000
133 I H 0.0000
134 N H 0.0000
135 T H -1.1093
136 D H -2.1435
137 T H -1.2580
138 G H -1.5480
139 E H -1.9159
140 P H -0.6252
141 T H 0.0000
142 Y H -1.0449
143 A H 0.0000
144 D H -3.2802
145 D H -3.2326
146 F H 0.0000
147 K H -2.7180
148 G H -1.7496
149 R H -1.3318
150 F H 0.0000
151 V H -0.0629
152 F H 0.0000
153 S H -0.0516
154 L H 0.1512
155 D H -0.6508
156 T H -0.3053
157 S H 0.0161
158 V H 0.5464
159 S H -0.1532
160 T H 0.0000
161 A H 0.0000
162 Y H -0.2846
163 L H 0.0000
164 Q H -0.9396
165 I H 0.0000
166 S H -0.8433
167 S H -1.0464
168 L H 0.0000
169 K H -2.4643
170 A H -1.8648
171 E H -2.2505
172 D H 0.0000
173 T H -0.9578
174 A H 0.0000
175 V H -0.2371
176 Y H 0.0000
177 Y H 0.0000
178 C H 0.0000
179 A H 0.0000
180 R H 0.0000
181 N H -0.1837
182 P H 0.2442
183 P H 0.7518
184 Y H 1.9070
185 Y H 2.1404
186 Y H 1.5297
187 G H 0.6977
188 T H -0.3597
189 N H 0.0000
190 Y H -0.0873
191 A H 0.0000
192 E H -1.6220
193 A H -0.7816
194 M H 0.0000
195 D H -0.4667
196 Y H -0.1476
197 W H -0.2904
198 G H 0.0000
199 Q H -1.4333
200 G H -0.7224
201 T H 0.0000
202 T H 0.0235
203 V H 0.0000
204 T H -0.2860
205 V H 0.0000
206 S H -0.8339
207 S H -0.8375
208 D L -1.4270
209 I L 0.2065
210 Q L -0.7250
211 M L 0.0079
212 T L 0.0000
213 Q L 0.0000
214 S L -0.3602
215 P L -0.6650
216 S L -0.9366
217 S L -1.1480
218 L L -0.8254
219 S L -1.1781
220 A L 0.0000
221 S L -1.0177
222 V L -0.2013
223 G L -0.9640
224 D L -1.9774
225 R L -2.3989
226 V L 0.0000
227 T L -0.5041
228 I L 0.0000
229 T L -0.5421
230 C L 0.0000
231 S L -1.3915
232 S L -1.5572
233 S L -1.1522
234 Q L -1.8869
235 D L -2.6782
236 I L -0.8121
237 S L -1.1754
238 N L -0.7996
239 Y L 0.3903
240 L L 0.0000
241 N L 0.0000
242 W L 0.0000
243 Y L 0.0000
244 L L -0.4031
245 Q L -0.9467
246 K L -1.2358
247 P L -1.0003
248 G L -1.3966
249 Q L -2.0555
250 S L -1.4271
251 P L 0.0000
252 Q L -1.3697
253 L L 0.0000
254 L L 0.0000
255 I L 0.0000
256 Y L 0.7205
257 Y L 0.8100
258 T L 0.0000
259 S L -0.0699
260 T L 0.5034
261 L L 0.8272
262 H L 0.5992
263 L L 1.4246
264 G L 0.4227
265 V L 0.4186
266 P L -0.1480
267 S L -0.4660
268 R L -0.9778
269 F L 0.0000
270 S L -0.3840
271 G L -0.1708
272 S L -0.7976
273 G L -1.2566
274 S L -1.3642
275 G L -1.6245
276 T L -2.0813
277 E L -2.4720
278 F L 0.0000
279 T L -0.6767
280 L L 0.0000
281 T L -0.6580
282 I L 0.0000
283 S L -1.5730
284 S L -1.4111
285 L L 0.0000
286 Q L -1.0525
287 P L -0.9907
288 D L -1.6239
289 D L 0.0000
290 F L -0.4857
291 A L 0.0000
292 T L 0.0000
293 Y L 0.0000
294 Y L 0.0000
295 C L 0.0000
296 Q L 0.0000
297 Q L 0.0000
298 Y L 0.0000
299 Y L 0.1530
300 N L -0.3923
301 L L 0.0000
302 P L -0.4567
303 W L 0.0000
304 T L 0.1694
305 F L 0.0000
306 G L 0.0000
307 Q L -0.8756
308 G L 0.0000
309 T L 0.0000
310 K L -2.0907
311 V L 0.0000
312 E L -2.0169
313 I L -1.0518
314 K L -1.7330
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Laboratory of Theory of Biopolymers 2018