Project name: ECD_33_1st

Status: done

Started: 2024-06-18 21:30:41
Settings
Chain sequence(s) A: NFTLPPNFGKRPTDLELSVKLVEMLKNIMLLLGCTLEESKIKEVLEKPKYIDLALEAQFGIMPKTALELAKVFRLKNIEALAILVCGCSPPGNLSNLFSLKLKGDLNLSLVMTTCSTRCARERMADLLEKYSRGIYDGDLKDKVPYKGIEISLELVLKPCTEGIELKSKRPQLLREVKKKLEEEVEKLSKEVTELSEENVGKSIMFAMTPKIRETSSLMPRLGYEEGLKISTEACLNGRCRRTVSVETGCRNVQLCSTILNVAFPPEVIGPLFFFPLLYMREQQKEGEELVEKYKEEEKKKE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:06:45)
[INFO]       Main:     Simulation completed successfully.                                          (00:06:46)
Show buried residues

Minimal score value
-5.6908
Maximal score value
1.7258
Average score
-1.2617
Total score value
-381.0445

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -0.6918
2 F A 0.5154
3 T A 0.2213
4 L A 0.1761
5 P A -0.4230
6 P A -0.9965
7 N A -2.1233
8 F A -1.4338
9 G A -1.5307
10 K A -2.2758
11 R A -1.4630
12 P A -0.6881
13 T A -0.7213
14 D A -0.7151
15 L A 0.4655
16 E A -0.5574
17 L A 0.0000
18 S A 0.3865
19 V A 0.6277
20 K A -0.4435
21 L A 0.0000
22 V A -0.2022
23 E A -1.3096
24 M A 0.0000
25 L A 0.0000
26 K A -1.4237
27 N A -1.2975
28 I A -0.7265
29 M A 0.0000
30 L A -0.4958
31 L A -0.5935
32 L A 0.0000
33 G A 0.0000
34 C A 0.0000
35 T A -0.2643
36 L A 0.0000
37 E A -2.4963
38 E A -3.2579
39 S A -2.6185
40 K A -2.7747
41 I A -2.4393
42 K A -3.4964
43 E A -3.6568
44 V A 0.0000
45 L A -1.7360
46 E A -3.1642
47 K A -3.1808
48 P A -2.2652
49 K A -2.7631
50 Y A -1.7011
51 I A -1.5199
52 D A -2.7461
53 L A 0.0000
54 A A 0.0000
55 L A -0.9893
56 E A -2.0988
57 A A 0.0000
58 Q A 0.0000
59 F A 0.0000
60 G A -1.1171
61 I A 0.0000
62 M A 0.0000
63 P A 0.0000
64 K A -1.5718
65 T A -1.1932
66 A A 0.0000
67 L A -1.0975
68 E A -2.0664
69 L A 0.0000
70 A A 0.0000
71 K A -1.7867
72 V A 0.1495
73 F A -1.1895
74 R A -2.4295
75 L A -1.8511
76 K A -2.5115
77 N A -1.7835
78 I A -0.3857
79 E A 0.0000
80 A A 0.0000
81 L A 0.0000
82 A A 0.0000
83 I A 0.0000
84 L A 0.0000
85 V A 0.0000
86 C A 0.0000
87 G A 0.0000
88 C A 0.0000
89 S A 0.0000
90 P A 0.0000
91 P A 0.0000
92 G A 0.0000
93 N A -0.4161
94 L A 0.1776
95 S A 0.0000
96 N A 0.0000
97 L A 1.1974
98 F A 0.0000
99 S A 0.0000
100 L A 0.6481
101 K A -0.5385
102 L A 0.0000
103 K A -2.0569
104 G A 0.0000
105 D A -1.3086
106 L A -0.0629
107 N A -0.6687
108 L A 0.0000
109 S A 0.0000
110 L A -0.2256
111 V A 0.0000
112 M A 0.0000
113 T A 0.0000
114 T A -0.2156
115 C A 0.0597
116 S A 0.0000
117 T A 0.0000
118 R A -2.0375
119 C A -1.6688
120 A A 0.0000
121 R A -3.5915
122 E A -3.7063
123 R A -3.2094
124 M A 0.0000
125 A A 0.0000
126 D A -2.8593
127 L A 0.0000
128 L A 0.0000
129 E A -2.6069
130 K A -2.1371
131 Y A -1.4947
132 S A 0.0000
133 R A -2.9696
134 G A -2.0255
135 I A -1.6773
136 Y A -1.9895
137 D A -2.7120
138 G A -2.6107
139 D A -3.6645
140 L A 0.0000
141 K A -3.4104
142 D A -3.3128
143 K A -2.5026
144 V A 0.0000
145 P A -1.2612
146 Y A -1.2334
147 K A -1.4444
148 G A -0.6787
149 I A 0.0000
150 E A -1.9518
151 I A -0.5911
152 S A 0.0000
153 L A 0.0000
154 E A -2.4411
155 L A -1.2550
156 V A 0.0000
157 L A 0.0000
158 K A -2.6876
159 P A -1.9345
160 C A 0.0000
161 T A -1.7194
162 E A -2.7082
163 G A 0.0000
164 I A -1.7901
165 E A -3.0839
166 L A -2.2818
167 K A -2.6797
168 S A -2.8456
169 K A -3.1335
170 R A -2.9661
171 P A -2.3170
172 Q A -2.2474
173 L A -1.5235
174 L A 0.0000
175 R A -3.5354
176 E A -3.6136
177 V A -2.6824
178 K A -3.5768
179 K A -4.9936
180 K A -4.9964
181 L A -3.9761
182 E A -4.9353
183 E A -5.4691
184 E A -5.1396
185 V A -4.0819
186 E A -4.8070
187 K A -4.5367
188 L A -3.4358
189 S A -2.9502
190 K A -3.7423
191 E A -3.2856
192 V A 0.0000
193 T A -2.2409
194 E A -3.3759
195 L A -2.5293
196 S A -2.1065
197 E A -3.1028
198 E A -3.0669
199 N A 0.0000
200 V A 0.0000
201 G A -2.0561
202 K A -2.0511
203 S A -0.2533
204 I A 0.4191
205 M A 0.9110
206 F A 1.7258
207 A A 1.0883
208 M A 0.0000
209 T A -0.3496
210 P A -1.1250
211 K A -1.9688
212 I A 0.0000
213 R A -1.6691
214 E A -2.4407
215 T A 0.0000
216 S A 0.0000
217 S A -1.5677
218 L A -0.6980
219 M A 0.0000
220 P A 0.0000
221 R A -2.0807
222 L A -0.9228
223 G A 0.0000
224 Y A 0.0000
225 E A -2.5540
226 E A -2.2196
227 G A 0.0000
228 L A -1.6010
229 K A -2.6340
230 I A -1.7463
231 S A 0.0000
232 T A -1.4969
233 E A -1.9122
234 A A -1.0762
235 C A -0.3402
236 L A -1.0537
237 N A -1.9203
238 G A -2.0518
239 R A -2.9321
240 C A 0.0000
241 R A -1.8830
242 R A -1.4299
243 T A 0.0000
244 V A 0.0000
245 S A 0.0000
246 V A 0.0000
247 E A 0.0000
248 T A 0.0000
249 G A 0.0000
250 C A 0.0000
251 R A 0.0000
252 N A 0.0000
253 V A 0.0000
254 Q A -0.3120
255 L A 0.0000
256 C A 0.0000
257 S A 0.0000
258 T A 0.0000
259 I A 0.0000
260 L A 0.0000
261 N A 0.1679
262 V A 0.4761
263 A A -0.1185
264 F A 0.0000
265 P A -0.3020
266 P A -1.0055
267 E A -1.4942
268 V A 0.6882
269 I A 0.0000
270 G A -0.1350
271 P A 0.2811
272 L A 0.0000
273 F A 0.0000
274 F A 0.0000
275 F A 0.0000
276 P A 0.0000
277 L A 0.1368
278 L A 0.0000
279 Y A 0.0000
280 M A -0.8340
281 R A -2.1014
282 E A 0.0000
283 Q A 0.0000
284 Q A -2.3860
285 K A -3.4119
286 E A -2.9915
287 G A 0.0000
288 E A -2.9968
289 E A -3.7526
290 L A -2.6373
291 V A 0.0000
292 E A -4.3650
293 K A -4.2453
294 Y A -3.8960
295 K A -4.9956
296 E A -5.5994
297 E A -5.6908
298 E A -5.3348
299 K A -5.5758
300 K A -5.3890
301 K A -4.8897
302 E A -4.1707
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Laboratory of Theory of Biopolymers 2018