| Chain sequence(s) |
A: KKGHKGH
C: KKGHKGH B: KKGHKGH E: KKGHKGH D: KKGHKGH G: KKGHKGH F: KKGHKGH I: KKGHKGH H: KKGHKGH K: KKGHKGH J: KKGHKGH L: KKGHKGH input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:14)
[INFO] Main: Simulation completed successfully. (00:03:17)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | K | A | -2.9968 | |
| 2 | K | A | -3.9594 | |
| 3 | G | A | -3.3555 | |
| 4 | H | A | -3.3705 | |
| 5 | K | A | -3.5688 | |
| 6 | G | A | -2.5381 | |
| 7 | H | A | -2.0411 | |
| 1 | K | B | -3.5238 | |
| 2 | K | B | -3.9474 | |
| 3 | G | B | -3.4263 | |
| 4 | H | B | -3.3794 | |
| 5 | K | B | -3.2848 | |
| 6 | G | B | -2.4652 | |
| 7 | H | B | -1.9293 | |
| 1 | K | C | -3.0127 | |
| 2 | K | C | -4.3580 | |
| 3 | G | C | -3.8381 | |
| 4 | H | C | -3.5368 | |
| 5 | K | C | -4.1179 | |
| 6 | G | C | -2.4424 | |
| 7 | H | C | -3.0127 | |
| 1 | K | D | -2.7266 | |
| 2 | K | D | -3.3054 | |
| 3 | G | D | -2.6650 | |
| 4 | H | D | -3.1892 | |
| 5 | K | D | -3.2940 | |
| 6 | G | D | -2.7871 | |
| 7 | H | D | -3.0968 | |
| 1 | K | E | -2.8206 | |
| 2 | K | E | -3.2777 | |
| 3 | G | E | -3.1558 | |
| 4 | H | E | -3.9671 | |
| 5 | K | E | -4.3533 | |
| 6 | G | E | -3.6252 | |
| 7 | H | E | -3.5684 | |
| 1 | K | F | -4.0559 | |
| 2 | K | F | -4.7471 | |
| 3 | G | F | -3.2711 | |
| 4 | H | F | -3.9098 | |
| 5 | K | F | -3.6111 | |
| 6 | G | F | -2.7085 | |
| 7 | H | F | -2.9097 | |
| 1 | K | G | -3.6619 | |
| 2 | K | G | -4.1006 | |
| 3 | G | G | -3.7723 | |
| 4 | H | G | -3.7543 | |
| 5 | K | G | -4.4601 | |
| 6 | G | G | -3.3154 | |
| 7 | H | G | -2.6177 | |
| 1 | K | H | -3.6091 | |
| 2 | K | H | -3.9575 | |
| 3 | G | H | -3.8112 | |
| 4 | H | H | -3.2890 | |
| 5 | K | H | -3.6665 | |
| 6 | G | H | -2.4682 | |
| 7 | H | H | -2.5669 | |
| 1 | K | I | -3.5842 | |
| 2 | K | I | -3.7961 | |
| 3 | G | I | -3.8710 | |
| 4 | H | I | -3.4260 | |
| 5 | K | I | -4.1600 | |
| 6 | G | I | -2.7458 | |
| 7 | H | I | -2.7171 | |
| 1 | K | J | -3.1040 | |
| 2 | K | J | -3.4697 | |
| 3 | G | J | -3.7790 | |
| 4 | H | J | -3.8998 | |
| 5 | K | J | -4.1026 | |
| 6 | G | J | -3.3456 | |
| 7 | H | J | -3.1865 | |
| 1 | K | K | -3.8662 | |
| 2 | K | K | -4.0211 | |
| 3 | G | K | -3.7598 | |
| 4 | H | K | -3.2096 | |
| 5 | K | K | -3.4664 | |
| 6 | G | K | -2.9362 | |
| 7 | H | K | -3.9910 | |
| 1 | K | L | -3.6981 | |
| 2 | K | L | -4.2280 | |
| 3 | G | L | -4.0136 | |
| 4 | H | L | -3.9273 | |
| 5 | K | L | -3.4203 | |
| 6 | G | L | -2.1064 | |
| 7 | H | L | -1.8041 |